Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010227A_C01 KMC010227A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_212886.1| B. burgdorferi predicted coding region BB0752 [... 32 2.4
ref|NP_385121.1| PROBABLE SENSOR HISTIDINE KINASE PROTEIN [Sinor... 31 4.0
ref|NP_469640.1| similar to internalin proteins [Listeria innocu... 30 6.8
ref|NP_438033.1| putative 4-hydroxyphenylpyruvate dioxygenase pr... 30 8.9
pir||S52209 noncapsid protein NS1 - muscovy duck parvovirus gi|6... 30 8.9
>ref|NP_212886.1| B. burgdorferi predicted coding region BB0752 [Borrelia
burgdorferi] gi|3915385|sp|O51693|Y752_BORBU
Hypothetical protein BB0752 gi|7463395|pir||G70193
hypothetical protein BB0752 - Lyme disease spirochete
gi|2688695|gb|AAC67105.1| B. burgdorferi predicted
coding region BB0752 [Borrelia burgdorferi B31]
Length = 502
Score = 31.6 bits (70), Expect = 2.4
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 127 IKRETEITEPHYTTTDPWVSS--IIAEPSVVVVMFPLYSRYRESW 255
+K++ + + YT T PW SS +I + V PL++ ++SW
Sbjct: 315 VKKDMPLLKNFYTATIPWSSSLELIKKDETEVKFLPLFASSKQSW 359
>ref|NP_385121.1| PROBABLE SENSOR HISTIDINE KINASE PROTEIN [Sinorhizobium meliloti]
gi|15073946|emb|CAC45587.1| PROBABLE SENSOR HISTIDINE
KINASE PROTEIN [Sinorhizobium meliloti]
Length = 461
Score = 30.8 bits (68), Expect = 4.0
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 151 EPHYTTTDPWVSSI-IAEPSVVVVMFPLYSRYRESWNRSLEHEGHCPTTNIIKFSNPILK 327
E YTTTDP+ + + +AE VV+ + +R+R + NR + +I +F+ +
Sbjct: 122 ERFYTTTDPFGNEVEVAETEVVLDIQGHAARFRVAGNRDVLE------ADIDRFTRNLTI 175
Query: 328 QIYVFGMMKIGIASI 372
+ +FG+ +G+ ++
Sbjct: 176 ALSIFGLGGLGVNAL 190
>ref|NP_469640.1| similar to internalin proteins [Listeria innocua]
gi|25517274|pir||AH1469 internalin protein homolog
lin0295 [imported] - Listeria innocua (strain Clip11262)
gi|16412724|emb|CAC95528.1| similar to internalin
proteins [Listeria innocua]
Length = 361
Score = 30.0 bits (66), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 366 GNSYLHHTKYIDLFQNGIGKFDNV 295
G YLH+ K +DL QN I DN+
Sbjct: 97 GMEYLHNLKLVDLSQNNISNLDNL 120
>ref|NP_438033.1| putative 4-hydroxyphenylpyruvate dioxygenase protein [Sinorhizobium
meliloti] gi|25498800|pir||E96028 probable
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
[imported] - Sinorhizobium meliloti (strain 1021)
magaplasmid pSymB gi|15141381|emb|CAC49893.1| putative
4-hydroxyphenylpyruvate dioxygenase protein
[Sinorhizobium meliloti]
Length = 629
Score = 29.6 bits (65), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 197 QSLPSWWLCFLSIVDIESLG-TDLWNMRGIVQQQTLSN 307
+ LPSW L + SI+D + L D+ + G+++ Q + N
Sbjct: 447 EELPSWLLFYTSILDADKLAEVDIVDPAGLIRSQVVEN 484
>pir||S52209 noncapsid protein NS1 - muscovy duck parvovirus
gi|609092|emb|CAA52983.1| NS1 [Muscovy duck parvovirus]
Length = 626
Score = 29.6 bits (65), Expect = 8.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 395 QHCKYSLCIEAIPIFIIPNT*IC 327
Q CK S+CIE P+ I NT +C
Sbjct: 404 QKCKGSVCIEPTPVIITSNTDMC 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,962,306
Number of Sequences: 1393205
Number of extensions: 7927992
Number of successful extensions: 19024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19019
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
