Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010223A_C01 KMC010223A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565817.1| putative glycogenin; protein id: At2g35710.1 [A... 89 3e-17
gb|AAL36305.1| unknown protein [Arabidopsis thaliana] gi|2046556... 89 3e-17
pir||A84772 probable glycogenin [imported] - Arabidopsis thaliana 85 5e-16
gb|AAK15448.1|AC037426_10 hypothetical protein [Oryza sativa (ja... 83 2e-15
ref|NP_193393.1| glucosyltransferase like protein; protein id: A... 80 2e-14
>ref|NP_565817.1| putative glycogenin; protein id: At2g35710.1 [Arabidopsis thaliana]
gi|20197539|gb|AAD15444.2| putative glycogenin
[Arabidopsis thaliana]
Length = 389
Score = 89.0 bits (219), Expect = 3e-17
Identities = 41/67 (61%), Positives = 48/67 (71%)
Frame = -2
Query: 504 LLXMAFPWYPDGXVRALCVFAYAFCAAPIVWASMTRIMVGLQLSLEREAFLPRLGESSPP 325
LL MAFPWYPDG VRAL VFAYAFC AP VW S +I LQ+ +E+E PRLG+S
Sbjct: 323 LLVMAFPWYPDGVVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVLFPRLGDSGVT 382
Query: 324 SWFNQLY 304
S F++LY
Sbjct: 383 SGFSKLY 389
>gb|AAL36305.1| unknown protein [Arabidopsis thaliana] gi|20465569|gb|AAM20267.1|
putative glycogenin protein [Arabidopsis thaliana]
Length = 497
Score = 89.0 bits (219), Expect = 3e-17
Identities = 41/67 (61%), Positives = 48/67 (71%)
Frame = -2
Query: 504 LLXMAFPWYPDGXVRALCVFAYAFCAAPIVWASMTRIMVGLQLSLEREAFLPRLGESSPP 325
LL MAFPWYPDG VRAL VFAYAFC AP VW S +I LQ+ +E+E PRLG+S
Sbjct: 431 LLVMAFPWYPDGVVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVLFPRLGDSGVT 490
Query: 324 SWFNQLY 304
S F++LY
Sbjct: 491 SGFSKLY 497
>pir||A84772 probable glycogenin [imported] - Arabidopsis thaliana
Length = 470
Score = 84.7 bits (208), Expect = 5e-16
Identities = 39/65 (60%), Positives = 46/65 (70%)
Frame = -2
Query: 504 LLXMAFPWYPDGXVRALCVFAYAFCAAPIVWASMTRIMVGLQLSLEREAFLPRLGESSPP 325
LL MAFPWYPDG VRAL VFAYAFC AP VW S +I LQ+ +E+E PRLG+S
Sbjct: 379 LLVMAFPWYPDGVVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVLFPRLGDSGVT 438
Query: 324 SWFNQ 310
S F++
Sbjct: 439 SGFSK 443
>gb|AAK15448.1|AC037426_10 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 492
Score = 82.8 bits (203), Expect = 2e-15
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = -2
Query: 495 MAFPWYPDGXVRALCVFAYAFCAAPIVWASMTRIMVGLQLSLEREAFLPRLGESSPPSWF 316
MAFPWY G VR L +F YAFC+AP +WAS+ R+M LQ LERE F PRLGE + + F
Sbjct: 429 MAFPWYHGGIVRVLAIFGYAFCSAPFLWASLVRVMDSLQTMLEREPFFPRLGEPAQETEF 488
Query: 315 NQLY 304
++L+
Sbjct: 489 SKLF 492
>ref|NP_193393.1| glucosyltransferase like protein; protein id: At4g16600.1
[Arabidopsis thaliana] gi|7485028|pir||A71433
hypothetical protein - Arabidopsis thaliana
gi|2245015|emb|CAB10435.1| glucosyltransferase like
protein [Arabidopsis thaliana]
gi|7268410|emb|CAB78702.1| glucosyltransferase like
protein [Arabidopsis thaliana]
Length = 442
Score = 79.7 bits (195), Expect = 2e-14
Identities = 37/67 (55%), Positives = 45/67 (66%)
Frame = -2
Query: 504 LLXMAFPWYPDGXVRALCVFAYAFCAAPIVWASMTRIMVGLQLSLEREAFLPRLGESSPP 325
LL MAFP YPDG VRAL VF YAFC AP +W S +I LQ+ +++E PRLGES
Sbjct: 376 LLVMAFPSYPDGVVRALSVFGYAFCCAPFLWVSFVKITSHLQIMIDKEVLFPRLGESGVT 435
Query: 324 SWFNQLY 304
S ++LY
Sbjct: 436 SGLSKLY 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,958,037
Number of Sequences: 1393205
Number of extensions: 9942641
Number of successful extensions: 27051
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26969
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
