Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010203A_C01 KMC010203A_c01
(735 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum] g... 40 0.045
gb|AAO51644.1| similar to Dictyostelium discoideum (Slime mold).... 39 0.099
ref|XP_241556.1| hypothetical protein XP_241556 [Rattus norvegicus] 39 0.099
ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7... 39 0.099
ref|NP_650326.1| CG12537-PA [Drosophila melanogaster] gi|7299830... 38 0.13
>gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum]
gi|28828387|gb|AAM09303.2| similar to Plasmodium
lophurae. Histidine-rich glycoprotein precursor
[Dictyostelium discoideum]
Length = 233
Score = 39.7 bits (91), Expect = 0.045
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 452 HNHHHYSKSLNHHFSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHP 610
H+HHH+ HH +P H P +P+P P +P H P +P
Sbjct: 145 HHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNP 197
Score = 38.1 bits (87), Expect = 0.13
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 452 HNHHHYSKSLNHHFSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHP 610
H+HHH+ +HH +P H+ P +P+P P +P P HP
Sbjct: 139 HHHHHHHHHHHHHHHHP------HHHPHPHPHPHPHPHLHPNPHPHPHPHPHP 185
Score = 37.0 bits (84), Expect = 0.29
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 452 HNHHHYSKSLNHHFSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHP 610
H+HHH+ +HH + H+ H+P+P P +P P HP
Sbjct: 125 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHP 177
Score = 35.0 bits (79), Expect = 1.1
Identities = 17/60 (28%), Positives = 24/60 (39%), Gaps = 7/60 (11%)
Frame = +2
Query: 452 HNHHHYSKSLNHH-------FSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHP 610
H+HHH+ +HH +P + H P +P+P P NP P HP
Sbjct: 146 HHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHP 205
Score = 34.3 bits (77), Expect = 1.9
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 452 HNHHHYSKSLNHHFSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHP 610
H+HHH+ +HH + H+ H+P+ P +P P HP
Sbjct: 121 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHP 173
>gb|AAO51644.1| similar to Dictyostelium discoideum (Slime mold). Prespore-specific
protein (Fragment)
Length = 370
Score = 38.5 bits (88), Expect = 0.099
Identities = 29/79 (36%), Positives = 39/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 452 HNHHHYSKSLNHHFSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSP--QTHPFSPFS 625
H+HHH HH YP +H+S + + Y NP SQP P++ P QT+ F P
Sbjct: 206 HHHHH------HHQQYP-----NHHSYNYNREQYQNPYSQPPPTPTNYPPMQTN-FQPPP 253
Query: 626 NLTCLNSYPQRDSQNAHLM 682
T L PQ D + A L+
Sbjct: 254 MPTIL---PQGDDELADLL 269
>ref|XP_241556.1| hypothetical protein XP_241556 [Rattus norvegicus]
Length = 234
Score = 38.5 bits (88), Expect = 0.099
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Frame = +2
Query: 446 AKHNHHHYSKSLNHHFSYPESILSSHY--------SASPTQGHYPNPTSQPGQNP-SHSP 598
A H HHH+ +++ H PE+I + H+ S+SP + P+ +S +P S SP
Sbjct: 156 AIHVHHHHPEAIPIHHHNPETIPALHHHLRGHSCPSSSPQRSSLPSSSSSSRDHPYSSSP 215
Query: 599 QTHPF-SPFSNLTCLNS 646
+ HP S F + C +S
Sbjct: 216 RGHPHPSSFRSHPCPSS 232
>ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496006|gb|AAN35668.1|AE014837_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1477
Score = 38.5 bits (88), Expect = 0.099
Identities = 20/53 (37%), Positives = 30/53 (55%)
Frame = +2
Query: 494 SYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHPFSPFSNLTCLNSYP 652
S P S SS S+SP+ P+ + P +PS SP + P SP S L+ +++P
Sbjct: 559 SSPSSSPSSSPSSSPSSSPSPSSSPSPSSSPSSSPSSSPSSPPSPLSYKDNFP 611
>ref|NP_650326.1| CG12537-PA [Drosophila melanogaster] gi|7299830|gb|AAF55008.1|
CG12537-PA [Drosophila melanogaster]
Length = 431
Score = 38.1 bits (87), Expect = 0.13
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +2
Query: 425 CVHCEIRAKHNHHHYSKSLNHHFSYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQT 604
C H + +H+HHH+S S SS S+S + H+ N +S N PQ
Sbjct: 356 CAHPAQQQQHHHHHHSSS------------SSSSSSSSSSHHHHNSSSSSNSNNQQQPQQ 403
Query: 605 HPFSPFSNLTCLNS 646
P + C NS
Sbjct: 404 SPLCLVLLVKCPNS 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 653,610,282
Number of Sequences: 1393205
Number of extensions: 14716422
Number of successful extensions: 56747
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 45225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53216
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
