Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010202A_C01 KMC010202A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00068231.1| hypothetical protein [Microbulbifer degradans... 39 0.068
emb|CAA35992.1| trichohyalin [Ovis sp.] 35 0.57
sp|P22793|TRHY_SHEEP Trichohyalin gi|423321|pir||A40691 trichohy... 35 0.75
gb|EAA15474.1| Arabidopsis thaliana BRAHMA ortholog [Plasmodium ... 34 1.7
gb|AAF98066.1| reticulocyte-binding protein 2 homolog A [Plasmod... 33 2.2
>ref|ZP_00068231.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 1264
Score = 38.5 bits (88), Expect = 0.068
Identities = 22/72 (30%), Positives = 42/72 (57%)
Frame = +1
Query: 175 EDIFIRRSEDQKF*RSEDLKTRRSEDLKTRRSEDQKI*RPEALKVQKL*RSRSSEGPEAL 354
ED ++R ED++ R+ED + +R D + +R+ED+++ R E ++Q+ E E
Sbjct: 107 EDKELQRKEDRELQRTEDKELQRKGDRELQRAEDKELQRKENEELQR------KEDKELQ 160
Query: 355 KVQKQKLRRSED 390
+ + + L+R ED
Sbjct: 161 RKEDENLQRKED 172
Score = 34.3 bits (77), Expect = 1.3
Identities = 18/69 (26%), Positives = 38/69 (54%)
Frame = +2
Query: 173 QKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL*RSRSSEGPEALKDQRL 352
+++ +ED +++ E++++ R ED ++ R ED ++R ED++L R + D+ L
Sbjct: 133 RELQRAEDKELQRKENEELQRKEDKELQRKEDENLQRKEDKELQRKEEDIQRASQPDKEL 192
Query: 353 *RSRSRSYE 379
R + E
Sbjct: 193 ARKPEQEQE 201
>emb|CAA35992.1| trichohyalin [Ovis sp.]
Length = 458
Score = 35.4 bits (80), Expect = 0.57
Identities = 25/97 (25%), Positives = 45/97 (45%)
Frame = +1
Query: 148 DKQVLILTPEDIFIRRSEDQKF*RSEDLKTRRSEDLKTRRSEDQKI*RPEALKVQKL*RS 327
+++ L+ E+ R+ D+KF E L R E L+ R+ D+K E L ++ +
Sbjct: 165 EEEQLLQEREEQLRRQERDRKFREEEQLLQEREEQLR-RQERDRKFREEEQLLQEREEQL 223
Query: 328 RSSEGPEALKVQKQKLRRSEDPSFPLTLITKLHKFQH 438
R E + ++Q L+ SE+ K H+ +H
Sbjct: 224 RRQERDRKFREEEQLLKESEEQLRRQERDRKFHEKEH 260
Score = 33.1 bits (74), Expect = 2.8
Identities = 31/119 (26%), Positives = 55/119 (46%)
Frame = +1
Query: 148 DKQVLILTPEDIFIRRSEDQKF*RSEDLKTRRSEDLKTRRSEDQKI*RPEALKVQKL*RS 327
+++ L+ E+ R+ D+KF R E+ + SE+ R+ D+K E L ++ +
Sbjct: 211 EEEQLLQEREEQLRRQERDRKF-REEEQLLKESEEQLRRQERDRKFHEKEHLLREREEQQ 269
Query: 328 RSSEGPEALKVQKQKLRRSEDPSFPLTLITKLHKFQHEASSDQK*MVTGKCLYQEVQEQ 504
+ E + Q+++LRR+E + KF E S Q+ K + VQEQ
Sbjct: 270 LRRQELEGVFSQEEQLRRAEQEEEQRRQRQRDRKFLEEGQSLQREREEEK---RRVQEQ 325
>sp|P22793|TRHY_SHEEP Trichohyalin gi|423321|pir||A40691 trichohyalin - sheep
gi|295941|emb|CAA79165.1| trichohyalin [Ovis aries]
Length = 1549
Score = 35.0 bits (79), Expect = 0.75
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +1
Query: 145 FDKQVLILTPEDIFIRRSE-DQKF*RSEDLKTRRSEDLKTRRSEDQKI*RPEALKVQKL* 321
F ++ +L + +RR E D+KF E L R E L+ R+ D+K E L ++
Sbjct: 1254 FREEAQLLQEREEQLRRQERDRKFREEEQLLQEREEQLR-RQERDRKFREEEQLLQEREE 1312
Query: 322 RSRSSEGPEALKVQKQKLRRSEDPSFPLTLITKLHKFQH 438
+ R E + ++Q L+ SE+ K H+ +H
Sbjct: 1313 QLRRQERDRKFREEEQLLKESEEQLRRQERDRKFHEKEH 1351
Score = 32.7 bits (73), Expect = 3.7
Identities = 31/119 (26%), Positives = 55/119 (46%)
Frame = +1
Query: 148 DKQVLILTPEDIFIRRSEDQKF*RSEDLKTRRSEDLKTRRSEDQKI*RPEALKVQKL*RS 327
+++ L+ E+ R+ D+KF R E+ + SE+ R+ D+K E L ++ +
Sbjct: 1302 EEEQLLQEREEQLRRQERDRKF-REEEQLLKESEEQLRRQERDRKFHEKEHLLREREEQQ 1360
Query: 328 RSSEGPEALKVQKQKLRRSEDPSFPLTLITKLHKFQHEASSDQK*MVTGKCLYQEVQEQ 504
+ E + Q+++LRR+E + KF E S Q+ K + VQEQ
Sbjct: 1361 LRRQELEGVFSQEEQLRRAEQEEEQRRQRQRDRKFLEEEQSLQREREEEK---RRVQEQ 1416
Score = 32.3 bits (72), Expect = 4.8
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +1
Query: 148 DKQVLILTPEDIFIRRSEDQKF*RSEDLKTRRSEDLKTRRSEDQKI*RPEALKVQKL*RS 327
+++ L+ E+ R+ D+KF E L R E L+ R+ D+K E L ++ +
Sbjct: 1004 EEEQLLQEREEQLRRQERDRKFREEEQLLQEREEQLR-RQERDRKFREEEQLLQEREEQL 1062
Query: 328 RSSEGPEALKVQKQKLRRSE 387
R E + ++Q+LR E
Sbjct: 1063 RRQERDRKFREEEQQLRLLE 1082
>gb|EAA15474.1| Arabidopsis thaliana BRAHMA ortholog [Plasmodium yoelii yoelii]
Length = 988
Score = 33.9 bits (76), Expect = 1.7
Identities = 18/43 (41%), Positives = 25/43 (57%)
Frame = +2
Query: 173 QKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL 301
QK+ ED K+ EDQK+ ED K+ ED ++ EDQK+
Sbjct: 441 QKMSGGEDQKMSGEEDQKMSGGEDQKMSGGEDQKMSGGEDQKM 483
Score = 33.9 bits (76), Expect = 1.7
Identities = 18/43 (41%), Positives = 25/43 (57%)
Frame = +2
Query: 173 QKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL 301
QK+ ED K+ EDQK+ ED K+ ED ++ EDQK+
Sbjct: 449 QKMSGEEDQKMSGGEDQKMSGGEDQKMSGGEDQKMSGGEDQKM 491
Score = 33.1 bits (74), Expect = 2.8
Identities = 37/139 (26%), Positives = 55/139 (38%), Gaps = 1/139 (0%)
Frame = +3
Query: 189 QKI*RSEVLKIRRSEDQKI*RSEDQKI*GSEDLKTRSSEGPEALKVQKL*RTRGSEGPEA 368
QK+ E K+ EDQK+ EDQK+ G ED K G E K+ + S G
Sbjct: 441 QKMSGGEDQKMSGEEDQKMSGGEDQKMSGGEDQK---MSGGEDQKMSGGEDQKMSGGENQ 497
Query: 369 EVTKVRGSKLPSDSDHQASQVPT*SVVRSEVNGYRQMSLSRSTRAVYYSDKPTYQGSATA 548
+++ K+ D + S + S++N + A Y + K +Q S
Sbjct: 498 KMSGGEDQKMSGGEDQKMSGEER-DIQNSKMNHETNSDIDMEKEANYLNIKKIFQLSNKN 556
Query: 549 G-SGSSRNALQRSYSLNRN 602
G S + N Y N N
Sbjct: 557 GDSMRNNNKYDDDYLCNSN 575
Score = 32.7 bits (73), Expect = 3.7
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = +2
Query: 170 HQKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL 301
+++I ED K+ EDQK+ ED K+ ED ++ EDQK+
Sbjct: 432 NKEISDEEDQKMSGGEDQKMSGEEDQKMSGGEDQKMSGGEDQKM 475
Score = 32.0 bits (71), Expect = 6.3
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +2
Query: 173 QKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL 301
QK+ ED K+ EDQK+ E+ K+ ED ++ EDQK+
Sbjct: 473 QKMSGGEDQKMSGGEDQKMSGGENQKMSGGEDQKMSGGEDQKM 515
Score = 32.0 bits (71), Expect = 6.3
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +2
Query: 173 QKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL 301
QK+ ED K+ EDQK+ ED K+ E+ ++ EDQK+
Sbjct: 465 QKMSGGEDQKMSGGEDQKMSGGEDQKMSGGENQKMSGGEDQKM 507
Score = 32.0 bits (71), Expect = 6.3
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +2
Query: 173 QKIYSSEDLKIRSSEDQKI*RPEDLKI*RPEDLRIRRSEDQKL 301
QK+ ED K+ EDQK+ ED K+ ED ++ E+QK+
Sbjct: 457 QKMSGGEDQKMSGGEDQKMSGGEDQKMSGGEDQKMSGGENQKM 499
>gb|AAF98066.1| reticulocyte-binding protein 2 homolog A [Plasmodium falciparum]
Length = 1387
Score = 33.5 bits (75), Expect = 2.2
Identities = 42/170 (24%), Positives = 74/170 (42%), Gaps = 12/170 (7%)
Frame = +1
Query: 85 DNKYLFVDEQL*YSNVCLECFDKQVLILTPEDIFIRRSEDQKF*RSEDLKTRR-----SE 249
D L ++E L ++N ++ + LIL E+ R +K + E+ K R +
Sbjct: 1008 DKFLLKLNELLSHNNNDIKDLGDEKLILKEEEERKERERLEKAKQEEERKERERIEKEKQ 1067
Query: 250 DLKTRRSEDQKI*RPEALKVQKL*RSRSSEGPEALKVQKQ-------KLRRSEDPSFPLT 408
+ + E Q+ + EALK Q+ R + EALK Q+Q +L+R E
Sbjct: 1068 EKERLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLERE 1127
Query: 409 LITKLHKFQHEASSDQK*MVTGKCLYQEVQEQCTILTSLHTKVQPQQVLE 558
+L K + +Q+ + + L ++ QE+ + K Q Q+ LE
Sbjct: 1128 KQEQLQKEEELKRQEQERLQKEEALKRQEQER--LQKEEELKRQEQERLE 1175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,851,384
Number of Sequences: 1393205
Number of extensions: 8970093
Number of successful extensions: 25637
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25399
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
