Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010191A_C01 KMC010191A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187698.1| putative alpha-hydroxynitrile lyase; protein id... 140 8e-33
ref|NP_193402.1| cyanohydrin lyase like protein; protein id: At4... 89 3e-17
emb|CAC82615.1| hypothetical protein [Capsella rubella] 88 5e-17
ref|NP_200639.1| polyneuridine aldehyde esterase-like; also simi... 84 1e-15
ref|NP_173960.1| hypothetical protein; protein id: At1g26360.1 [... 64 1e-09
>ref|NP_187698.1| putative alpha-hydroxynitrile lyase; protein id: At3g10870.1,
supported by cDNA: gi_17381071, supported by cDNA:
gi_20465714 [Arabidopsis thaliana]
gi|6630543|gb|AAF19562.1|AC011708_5 putative
alpha-hydroxynitrile lyase [Arabidopsis thaliana]
gi|17381072|gb|AAL36348.1| putative alpha-hydroxynitrile
lyase [Arabidopsis thaliana] gi|20465715|gb|AAM20326.1|
putative alpha-hydroxynitrile lyase [Arabidopsis
thaliana]
Length = 276
Score = 140 bits (353), Expect = 8e-33
Identities = 65/107 (60%), Positives = 87/107 (80%), Gaps = 4/107 (3%)
Frame = -3
Query: 502 VKKELQRKIIYPLSPHEDSTLASMLLRPGPILALTSARFTEE----GEVETVPRVYIRTR 335
+K E +RK++Y +SP ++ +LA++++RP PILALT+A+ EE G+ E VPRVYI+T
Sbjct: 164 IKPEYRRKLLYHMSPQQECSLAALMMRPAPILALTTAKLEEEEKEKGQEEQVPRVYIKTL 223
Query: 334 HDNVVKPEQQEAMIKRWPPLSVYELDSDHSPFFSNPFLLFGFLVKAA 194
D V+KPEQQ+AMI+RWPP VYEL+SDHSPFFSNPF+LFG L+KAA
Sbjct: 224 LDRVMKPEQQDAMIRRWPPSQVYELESDHSPFFSNPFVLFGLLIKAA 270
>ref|NP_193402.1| cyanohydrin lyase like protein; protein id: At4g16690.1, supported
by cDNA: 5546. [Arabidopsis thaliana]
gi|7488081|pir||B71434 probable cyanohydrin lyase -
Arabidopsis thaliana gi|2245024|emb|CAB10444.1|
cyanohydrin lyase like protein [Arabidopsis thaliana]
gi|7268419|emb|CAB78711.1| cyanohydrin lyase like
protein [Arabidopsis thaliana]
gi|21593888|gb|AAM65855.1| cyanohydrin lyase like
protein [Arabidopsis thaliana]
Length = 262
Score = 89.0 bits (219), Expect = 3e-17
Identities = 48/107 (44%), Positives = 64/107 (58%), Gaps = 2/107 (1%)
Frame = -3
Query: 502 VKKELQRKIIYPLSPHEDSTLASMLLRPGPILALTSA-RFTEEGEVETVPRVYIRTRHDN 326
+K E R Y SP ED TL+S LLRP P+ A + E E VPRVYI+T DN
Sbjct: 153 MKPEFIRHYYYSQSPLEDVTLSSKLLRPAPMRAFQDLDKLPPNPEAEKVPRVYIKTAKDN 212
Query: 325 VVKPEQQEAMIKRWPPLSVYEL-DSDHSPFFSNPFLLFGFLVKAAAF 188
+ +Q+ +++ WPP +Y L DSDHS FFS P LF +L++A +F
Sbjct: 213 LFDSVRQDLLVENWPPSQLYVLEDSDHSAFFSVPTTLFAYLLRAVSF 259
>emb|CAC82615.1| hypothetical protein [Capsella rubella]
Length = 265
Score = 88.2 bits (217), Expect = 5e-17
Identities = 48/107 (44%), Positives = 66/107 (60%), Gaps = 2/107 (1%)
Frame = -3
Query: 502 VKKELQRKIIYPLSPHEDSTLASMLLRPGPILALTSA-RFTEEGEVETVPRVYIRTRHDN 326
+K+E R+ Y SP ED +LA+ LLRP P+ A + EVE VPRVYI+T DN
Sbjct: 156 MKQEFLRQYYYSQSPLEDVSLATKLLRPAPMRAFQDLDKSPPNPEVEKVPRVYIKTGKDN 215
Query: 325 VVKPEQQEAMIKRWPPLSVYEL-DSDHSPFFSNPFLLFGFLVKAAAF 188
+ +Q+ ++K WPP Y L +SDHS FFS P LF +L++A +F
Sbjct: 216 LFSSVRQDLLVKNWPPSQFYVLEESDHSAFFSVPTTLFVYLLRAVSF 262
>ref|NP_200639.1| polyneuridine aldehyde esterase-like; also similar to
alpha-hydroxynitrile lyase; protein id: At5g58310.1,
supported by cDNA: 123228. [Arabidopsis thaliana]
gi|8777332|dbj|BAA96922.1| polyneuridine aldehyde
esterase-like protein [Arabidopsis thaliana]
gi|21537195|gb|AAM61536.1| polyneuridine aldehyde
esterase-like [Arabidopsis thaliana]
gi|28393490|gb|AAO42166.1| putative polyneuridine
aldehyde esterase [Arabidopsis thaliana]
gi|28973535|gb|AAO64092.1| putative polyneuridine
aldehyde esterase [Arabidopsis thaliana]
Length = 263
Score = 83.6 bits (205), Expect = 1e-15
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Frame = -3
Query: 502 VKKELQRKIIYPLSPHEDSTLASMLLRPGPILALTSAR-FTEEGEVETVPRVYIRTRHDN 326
+K E R Y SP ED TLA+ LLRP P++A E + +PRVY++T D+
Sbjct: 154 MKPEYVRDKFYNESPMEDYTLATTLLRPAPVMAFIGIMDIPGAPETDKIPRVYVKTGKDH 213
Query: 325 VVKPEQQEAMIKRWPPLSVYEL-DSDHSPFFSNPFLLFGFLVKAAA 191
+ +P QE M+ WPP + L DSDHS FFS P L+ FL++AA+
Sbjct: 214 LFEPVLQEVMLALWPPAHTFLLPDSDHSAFFSQPQELYQFLLQAAS 259
>ref|NP_173960.1| hypothetical protein; protein id: At1g26360.1 [Arabidopsis
thaliana]
Length = 554
Score = 63.9 bits (154), Expect = 1e-09
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = -3
Query: 496 KELQRKIIYPLSPHEDSTLASMLLRPGPILALTSARFTEEGEVETVPRVYIRTRHDNVVK 317
+ L R ++ SP +D LAS+ +RP P ++ E ++ R YI+T D V
Sbjct: 332 RSLLRDFLFNQSPPKDLALASVSIRPIPFAPVSEKVHVSEKNYGSIRRFYIKTMEDYAVP 391
Query: 316 PEQQEAMIKRWPPLSVYEL-DSDHSPFFSNPFLLFGFLVK 200
QEAMIK PP V++L SDH+PFFS P L LV+
Sbjct: 392 VLLQEAMIKLNPPEQVFQLKGSDHAPFFSRPQSLNKILVE 431
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,307,707
Number of Sequences: 1393205
Number of extensions: 8781489
Number of successful extensions: 21434
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 20705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21404
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
