Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010190A_C01 KMC010190A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189083.1| protein kinase, putative; protein id: At3g24400... 49 3e-05
gb|AAO62420.1| p67-like superoxide-generating NADPH oxidase [Dic... 49 3e-05
sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 precursor (... 49 3e-05
ref|NP_177158.1| DNA binding protein MybSt1, putative; protein i... 49 4e-05
ref|NP_044328.1| replicase [Kennedya yellow mosaic virus] gi|548... 49 4e-05
>ref|NP_189083.1| protein kinase, putative; protein id: At3g24400.1 [Arabidopsis
thaliana]
Length = 694
Score = 49.3 bits (116), Expect = 3e-05
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = -1
Query: 463 AFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPL-- 290
A P AL P P A P PT + P+PPS+ L PSP++P PL
Sbjct: 37 ALPPALPPPPPPTALPPALPPPPPPTTVPPIPPSTPSPPPPLTPSPLPPSPTTPSPPLTP 96
Query: 289 ---PLSLKLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
S L PSPPP+ SP + P SP++ S
Sbjct: 97 SPTTPSPPLTPSPPPAITPSPPLTPSPLPPSPTTPS 132
Score = 48.9 bits (115), Expect = 3e-05
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTP------IFPVPPSSKMASLNLKEKAASPSPSS 305
P+ P L+P LP + P+ P+ P+P + P PP + S L PSP++
Sbjct: 72 PSPPPPLTPSPLPPSP-TTPSPPLTPSPTTPSPPLTPSPPPAITPSPPLTPSPLPPSPTT 130
Query: 304 PFEPLPL----SLKLQPSPPPSQDHSPATSSHSSPSSPSS 197
P P P S L PSPPPS P++ SP++PS+
Sbjct: 131 PSPPPPSPSIPSPPLTPSPPPSSPLRPSSPPPPSPATPST 170
Score = 46.6 bits (109), Expect = 2e-04
Identities = 35/95 (36%), Positives = 41/95 (42%), Gaps = 2/95 (2%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
P P SP + P P RP P P P PS+ S P PS+P P P
Sbjct: 135 PPSPSIPSPPLTPSPPPSSPLRPSSPPPPSPATPSTPPRS--------PPPPSTPTPP-P 185
Query: 286 LSLKLQPSPP--PSQDHSPATSSHSSPSSPSSSSS 188
L P PP PS SP+T S + SSP + SS
Sbjct: 186 RVGSLSPPPPASPSGGRSPSTPSTTPGSSPPAQSS 220
Score = 38.5 bits (88), Expect = 0.045
Identities = 33/101 (32%), Positives = 43/101 (41%), Gaps = 3/101 (2%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASP-SPSSPFEPL 290
P+ P A++P P+ P P P+P P PS L +SP PSSP P
Sbjct: 107 PSPPPAITPSP-PLTPSPLPPSPTTPSPP-PPSPSIPSPPLTPSPPPSSPLRPSSPPPPS 164
Query: 289 PLSLKLQPS--PPPSQDHSPATSSHSSPSSPSSSSSFQAMS 173
P + P PPPS P SP P+S S ++ S
Sbjct: 165 PATPSTPPRSPPPPSTPTPPPRVGSLSPPPPASPSGGRSPS 205
Score = 31.2 bits (69), Expect = 7.1
Identities = 25/76 (32%), Positives = 30/76 (38%)
Frame = -1
Query: 418 GERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSLKLQPSPPPSQDHS 239
G P+ P +P PI P PP + A P+ P P L L P PPP
Sbjct: 8 GGTPSPPPQPLPI-PPPPQPLPVTPPPPPTALPPALPPPPPPTALPPALPPPPPP-TTVP 65
Query: 238 PATSSHSSPSSPSSSS 191
P S SP P + S
Sbjct: 66 PIPPSTPSPPPPLTPS 81
>gb|AAO62420.1| p67-like superoxide-generating NADPH oxidase [Dictyostelium
discoideum] gi|29367189|gb|AAO72634.1| p67-like
superoxide-generating NADPH oxidase [Dictyostelium
discoideum]
Length = 604
Score = 48.9 bits (115), Expect = 3e-05
Identities = 31/67 (46%), Positives = 37/67 (54%)
Frame = -1
Query: 388 TPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSLKLQPSPPPSQDHSPATSSHSSPS 209
TP+ PPS + + ++SPS SSP S KL P+P PS SP SS SS S
Sbjct: 207 TPMSSSPPSYILKGPSSPPSSSSPSSSSPSLSSSSSPKLPPTPKPSFGSSPPPSSSSSSS 266
Query: 208 SPSSSSS 188
S SSSSS
Sbjct: 267 SSSSSSS 273
Score = 35.4 bits (80), Expect = 0.38
Identities = 24/59 (40%), Positives = 34/59 (56%)
Frame = -1
Query: 346 LNLKEKAASPSPSSPFEPLPLSLKLQPSPPPSQDHSPATSSHSSPSSPSSSSSFQAMSA 170
+N+K+ SPSPS PSP P + ++ +TSS+SS SS SSSSS + S+
Sbjct: 379 INVKDIIPSPSPS-------------PSPSPDKTNN-STSSYSSSSSSSSSSSSSSSSS 423
Score = 34.3 bits (77), Expect = 0.84
Identities = 28/75 (37%), Positives = 39/75 (51%), Gaps = 7/75 (9%)
Frame = -1
Query: 394 RPTPIFPVPPSSKMASLNLKEKAA------SPSPSSPFEPLPLSLKLQ-PSPPPSQDHSP 236
RP P+ + K++ K+++A S SPS+P P S L+ PS PPS
Sbjct: 172 RPIPLSLLFKPPKVSDAPQKQRSATTSSIQSSSPSTPMSSSPPSYILKGPSSPPSS---- 227
Query: 235 ATSSHSSPSSPSSSS 191
++ S SSPS SSSS
Sbjct: 228 SSPSSSSPSLSSSSS 242
Score = 33.5 bits (75), Expect = 1.4
Identities = 29/121 (23%), Positives = 47/121 (37%), Gaps = 15/121 (12%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFP------------VPPSSKMASLNLKEKAA 323
P+ P SP GG P P R +P +PP +S ++
Sbjct: 471 PSSPSFSSPSSSSSGGGGGPPIPTRGSPSISLLKQQNQTQSINIPPKVPTSSRPKMTQSH 530
Query: 322 SPSPSSPFEPLPLSLKLQPSPPPSQDHSPATSSH---SSPSSPSSSSSFQAMSAREVQRW 152
SP SSP S + SP S ++ +TSS+ SS P + +Q + +++
Sbjct: 531 SPPSSSPLSSYSTSFQSVSSPSLSSSYNGSTSSYGGFSSSRPPPTPYPYQVLYTDSNEKY 590
Query: 151 W 149
+
Sbjct: 591 Y 591
>sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 precursor (Hydroxyproline-rich
glycoprotein 1) gi|12018147|gb|AAG45420.1|AF309494_1
vegetative cell wall protein gp1 [Chlamydomonas
reinhardtii]
Length = 555
Score = 48.9 bits (115), Expect = 3e-05
Identities = 37/92 (40%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = -1
Query: 457 PMALSPVVLPVAGGE-RPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLS 281
PM SP P + P P P+P PVPPS A + SP+PS P P P +
Sbjct: 285 PMPPSPPSPPPSPAPPTPPTPPSPSPPSPVPPSP--APVPPSPAPPSPAPSPPPSPAPPT 342
Query: 280 LKLQPSPPPSQDHSPATSSHSSPS-SPSSSSS 188
PSP PS SP+ S SPS SP S S
Sbjct: 343 PSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPS 374
Score = 48.1 bits (113), Expect = 6e-05
Identities = 37/95 (38%), Positives = 42/95 (43%), Gaps = 4/95 (4%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSS---KMASLNLKEKAASPSPSSPFE 296
P FP P + PA P PTP P PPS A + SP+PS P
Sbjct: 278 PPFPANTPMPPSPPSPPPSPAPPTPPTPPSPSPPSPVPPSPAPVPPSPAPPSPAPSPPPS 337
Query: 295 PLPLSLKLQPSPPPSQDHSPATSSHSSPS-SPSSS 194
P P + PSP PS SP+ S SPS SPS S
Sbjct: 338 PAPPT----PSPSPSPSPSPSPSPSPSPSPSPSPS 368
Score = 47.4 bits (111), Expect = 1e-04
Identities = 35/92 (38%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P P P + G P P P+P P PPS S SP+P SP P P
Sbjct: 53 PAPPSPAPPSPAPPSPG--PPSPAPPSPPSPAPPSPAPPS----PAPPSPAPPSPAPPSP 106
Query: 286 L-SLKLQPSPPPSQDHSPATSSHSSPSSPSSS 194
PSP P SPA S S P+ PS S
Sbjct: 107 APPSPAPPSPAPPSPPSPAPPSPSPPAPPSPS 138
Score = 47.4 bits (111), Expect = 1e-04
Identities = 36/92 (39%), Positives = 41/92 (44%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P+ SP P P P P P P PPS S + SP+P SP P+P
Sbjct: 142 PAPPLPPSPAP-PSPSPPVPPSPSPPVPPSPAPPSPTPPSPS-PPVPPSPAPPSPAPPVP 199
Query: 286 LSLKLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
S PSP P SPA S SP+ PS S
Sbjct: 200 PS-PAPPSPAPPVPPSPAPPSPPSPAPPSPPS 230
Score = 46.6 bits (109), Expect = 2e-04
Identities = 35/93 (37%), Positives = 40/93 (42%), Gaps = 2/93 (2%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
P P + SP PV P P P+P PVPPS SP+P P P P
Sbjct: 157 PPVPPSPSP---PVPPSPAPPSPTPPSPSPPVPPSPA---------PPSPAPPVPPSPAP 204
Query: 286 LS--LKLQPSPPPSQDHSPATSSHSSPSSPSSS 194
S + PSP P SPA S SP+ PS S
Sbjct: 205 PSPAPPVPPSPAPPSPPSPAPPSPPSPAPPSPS 237
Score = 45.8 bits (107), Expect = 3e-04
Identities = 32/89 (35%), Positives = 38/89 (41%)
Frame = -1
Query: 457 PMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSL 278
P + +P V P PA P+ P+P P PPS S SP+P SP P P S
Sbjct: 191 PPSPAPPVPPSPAPPSPAPPVPPSPAPPSPPSPAPPS------PPSPAPPSPSPPAPPS- 243
Query: 277 KLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
P PP SPA S P+ P S
Sbjct: 244 ---PVPPSPAPPSPAPPSPKPPAPPPPPS 269
Score = 45.1 bits (105), Expect = 5e-04
Identities = 34/91 (37%), Positives = 36/91 (39%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P P P + P P P P PPS S SP+P SP P P
Sbjct: 81 PAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPS------PPSPAPPSPSPPAP 134
Query: 286 LSLKLQPSPPPSQDHSPATSSHSSPSSPSSS 194
S PSP P SPA S S P PS S
Sbjct: 135 PS-PSPPSPAPPLPPSPAPPSPSPPVPPSPS 164
Score = 44.7 bits (104), Expect = 6e-04
Identities = 34/89 (38%), Positives = 38/89 (42%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P P P P P P+P P PPS S + SPSP SP PLP
Sbjct: 91 PAPPSPAPPS--PAPPSPAPPSPAPPSPAPPSPPSPAPPSPS-PPAPPSPSPPSPAPPLP 147
Query: 286 LSLKLQPSPPPSQDHSPATSSHSSPSSPS 200
S PSP P SP+ SP+ PS
Sbjct: 148 PS-PAPPSPSPPVPPSPSPPVPPSPAPPS 175
Score = 44.3 bits (103), Expect = 8e-04
Identities = 32/92 (34%), Positives = 40/92 (42%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
P+ P + +P P P P+ P+P PVPPS S SP+P +P
Sbjct: 291 PSPPPSPAPPTPPTPPSPSPPSPVPPSPA-PVPPSPAPPS-PAPSPPPSPAPPTPSPSPS 348
Query: 286 LSLKLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
S PSP PS SP+ S SPS S S
Sbjct: 349 PSPSPSPSPSPSPSPSPSPSPIPSPSPKPSPS 380
Score = 43.9 bits (102), Expect = 0.001
Identities = 32/92 (34%), Positives = 37/92 (39%), Gaps = 1/92 (1%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
P P + +P P P P P+P P PPS S SP+P SP P P
Sbjct: 209 PPVPPSPAPPSPPSPAPPSPPSPAPPSPSPPAPPSPVPPS----PAPPSPAPPSPKPPAP 264
Query: 286 LSLKLQPSPPPSQDHSPA-TSSHSSPSSPSSS 194
P PPP + PA T SP SP S
Sbjct: 265 PPPPSPPPPPPPRPPFPANTPMPPSPPSPPPS 296
Score = 43.5 bits (101), Expect = 0.001
Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = -1
Query: 457 PMALSPVVLPVAGGERPARPIRPTPIFP-----VPPSSKMASLNLKEKAASPSPSSPFEP 293
P + SP V P PA P+ P+P P VPPS S SP+P SP P
Sbjct: 178 PPSPSPPVPPSPAPPSPAPPVPPSPAPPSPAPPVPPSPAPPS------PPSPAPPSPPSP 231
Query: 292 LPLSLKLQPSPPPSQDHSPATSSHSSPSSPS 200
P S PSPP P + + SP+ PS
Sbjct: 232 APPS----PSPPAPPSPVPPSPAPPSPAPPS 258
Score = 43.1 bits (100), Expect = 0.002
Identities = 30/91 (32%), Positives = 35/91 (37%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P P P + P P P P PPS + A PSP+ P P
Sbjct: 43 PAPPSPAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSPA---PPSPAPPSPAPPSPAPP 99
Query: 286 LSLKLQPSPPPSQDHSPATSSHSSPSSPSSS 194
P+PP SPA S SP+ PS S
Sbjct: 100 SPAPPSPAPPSPAPPSPAPPSPPSPAPPSPS 130
Score = 42.7 bits (99), Expect = 0.002
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKM----------ASLNLKEKAASP 317
PA P P P A P+ P P P P P ++ M + SP
Sbjct: 249 PAPPSPAPPSPKPPAPPPPPSPPPPPPPRPPFPANTPMPPSPPSPPPSPAPPTPPTPPSP 308
Query: 316 SPSSPFEPLPLSLKLQPSPP---PSQDHSPATSSHSSPSSPSSSSS 188
SP SP P P + P+PP PS SPA + S SPS S S
Sbjct: 309 SPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPS 354
Score = 42.7 bits (99), Expect = 0.002
Identities = 32/97 (32%), Positives = 41/97 (41%), Gaps = 5/97 (5%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPI--FPVPPSSKMASLNLKEKAASPS---PSSP 302
P P + +P P P+ P P+P+ P PPS S PS P P
Sbjct: 217 PPSPPSPAPPSPPSPAPPSPSPPAPPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPPP 276
Query: 301 FEPLPLSLKLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
P P + + PS PPS SPA + +P SPS S
Sbjct: 277 RPPFPANTPMPPS-PPSPPPSPAPPTPPTPPSPSPPS 312
Score = 42.4 bits (98), Expect = 0.003
Identities = 33/90 (36%), Positives = 36/90 (39%), Gaps = 1/90 (1%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P SP P P P P+P P+PPS S PSPS P P P
Sbjct: 116 PAPPSPPSPAP-PSPSPPAPPSPSPPSPAPPLPPSPAPPS---PSPPVPPSPSPPVPPSP 171
Query: 286 L-SLKLQPSPPPSQDHSPATSSHSSPSSPS 200
PSP P SPA S + P PS
Sbjct: 172 APPSPTPPSPSPPVPPSPAPPSPAPPVPPS 201
Score = 41.6 bits (96), Expect = 0.005
Identities = 35/94 (37%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -1
Query: 469 GPAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAA-SPSPSSPFEP 293
GP P SP P PA P P P P PPS S A SP+P SP P
Sbjct: 69 GPPSPAPPSP---PSPAPPSPAPP-SPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPPSP 124
Query: 292 LPLSLKLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
P S PSPP SP + + P SP+ S
Sbjct: 125 APPS----PSPPAPPSPSPPSPAPPLPPSPAPPS 154
Score = 40.0 bits (92), Expect = 0.015
Identities = 30/90 (33%), Positives = 36/90 (39%), Gaps = 4/90 (4%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
PA P P P P P P+P P PPS + + PSP+ P P P
Sbjct: 96 PAPPSPAPPS--PAPPSPAPPSPAPPSPPSPAPPSPSPPA---PPSPSPPSPAPPLPPSP 150
Query: 286 L----SLKLQPSPPPSQDHSPATSSHSSPS 209
S + PSP P SPA S + PS
Sbjct: 151 APPSPSPPVPPSPSPPVPPSPAPPSPTPPS 180
Score = 38.1 bits (87), Expect = 0.058
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Frame = -1
Query: 457 PMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSL 278
P + +P V P P P P+P P PPS + SP+P SP P P
Sbjct: 204 PPSPAPPVPPSPAPPSPPSPAPPSPPSPAPPSPSPPAPP-SPVPPSPAPPSPAPPSPKPP 262
Query: 277 KLQP---SPPPSQDHSPATSSHSSPSSPSS 197
P PPP P ++ P SP S
Sbjct: 263 APPPPPSPPPPPPPRPPFPANTPMPPSPPS 292
Score = 33.9 bits (76), Expect = 1.1
Identities = 23/64 (35%), Positives = 26/64 (39%)
Frame = -1
Query: 391 PTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSLKLQPSPPPSQDHSPATSSHSSP 212
P IF PPS A PSP+ P P P+PP SPA S SP
Sbjct: 33 PGGIFNCPPSP-----------APPSPAPPSPAPPSPAPPSPAPPSPGPPSPAPPSPPSP 81
Query: 211 SSPS 200
+ PS
Sbjct: 82 APPS 85
Score = 33.1 bits (74), Expect = 1.9
Identities = 28/89 (31%), Positives = 32/89 (35%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPSSPFEPLP 287
P P+ SP P P P P P P PP A +P P SP P
Sbjct: 241 PPSPVPPSPAP-PSPAPPSPKPPAPPPPPSPPPPPPPRPPF----PANTPMPPSPPSP-- 293
Query: 286 LSLKLQPSPPPSQDHSPATSSHSSPSSPS 200
PSP P +P + S SP PS
Sbjct: 294 -----PPSPAPPTPPTPPSPSPPSPVPPS 317
>ref|NP_177158.1| DNA binding protein MybSt1, putative; protein id: At1g70000.1
[Arabidopsis thaliana] gi|25406021|pir||F96722
hypothetical protein F20P5.26 [imported] - Arabidopsis
thaliana gi|2194137|gb|AAB61112.1| ESTs
gb|R29947,gb|H76702 come from this gene. [Arabidopsis
thaliana]
Length = 261
Score = 48.5 bits (114), Expect = 4e-05
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = -1
Query: 415 ERPARPIRPTPI-FPVPPSSKMASLNLKEKAASPSPSSPFEPLPLSLKLQPSPPPSQDHS 239
+ P IRP PI P+PPS KMA LNL +K +P+ + F PLSL LQ PS S
Sbjct: 178 QTPLELIRPVPIPIPIPPSRKMADLNLNKK-KTPATTEMF---PLSLNLQ---RPSSSTS 230
Query: 238 PATSSHSSPSSPSSSSSFQAMSA 170
+++ + S +SS F+AMS+
Sbjct: 231 SSSNEQKARGS-RASSGFEAMSS 252
>ref|NP_044328.1| replicase [Kennedya yellow mosaic virus]
gi|548564|sp|P36304|POLR_KYMVJ RNA replicase polyprotein
gi|420740|pir||JQ0533 genome polyprotein - Kennedya
yellow mosaic virus (strain Jervis Bay)
gi|221971|dbj|BAA00532.1| ORF for replicase protein
[Kennedya yellow mosaic virus]
Length = 1874
Score = 48.5 bits (114), Expect = 4e-05
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Frame = -1
Query: 466 PAFPMALSPVVLPVAGGERPARPIRPTPIFPVPPSSKMASLNLKEKAASPSPS---SPFE 296
P +A SP LP A P P+ +P+FP PP + L + A+ +PS +P E
Sbjct: 596 PYLALAPSPF-LPYAHSPLPPLPVNSSPLFPPPPPLPPSQPPLSQGPATQAPSAQPTPGE 654
Query: 295 PL--PLSLKLQPSPPPSQDHSPATSSHSSPSSPSSSS 191
PL P + +L+P + +P++S+ S+P SSSS
Sbjct: 655 PLLAPPTTELKPESSNPNNPNPSSSAGSNPPPKSSSS 691
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,053,002
Number of Sequences: 1393205
Number of extensions: 11938777
Number of successful extensions: 125455
Number of sequences better than 10.0: 3317
Number of HSP's better than 10.0 without gapping: 78512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109867
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
