Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010176A_C01 KMC010176A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC02925.1| UDP-glucose 4-epimerase [Oryza sativa (japonica ... 67 1e-10
gb|AAM62752.1| UDP-galactose 4-epimerase-like protein [Arabidops... 64 6e-10
sp|O65781|GAE2_CYATE UDP-glucose 4-epimerase GEPI48 (Galactowald... 63 1e-09
dbj|BAC24803.1| putative UDP-glucose 4-epimerase [Oryza sativa (... 63 2e-09
gb|AAF19668.1|AC009519_2 F1N19.2 [Arabidopsis thaliana] 62 2e-09
>dbj|BAC02925.1| UDP-glucose 4-epimerase [Oryza sativa (japonica cultivar-group)]
Length = 354
Score = 66.6 bits (161), Expect = 1e-10
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2
Query: 472 RELKWKAKYGIEEMCRDPWNWANQNPFGYASQD 374
+ELKWKAKYG+EEMCRD WNWA++NP+GY S D
Sbjct: 319 KELKWKAKYGVEEMCRDLWNWASKNPYGYGSPD 351
>gb|AAM62752.1| UDP-galactose 4-epimerase-like protein [Arabidopsis thaliana]
Length = 348
Score = 64.3 bits (155), Expect = 6e-10
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -2
Query: 469 ELKWKAKYGIEEMCRDPWNWANQNPFGYASQD 374
EL WKAKYGIEEMCRD WNWA+ NP+GY S+D
Sbjct: 314 ELNWKAKYGIEEMCRDLWNWASNNPYGYDSED 345
>sp|O65781|GAE2_CYATE UDP-glucose 4-epimerase GEPI48 (Galactowaldenase) (UDP-galactose
4-epimerase) gi|7437270|pir||T10498 UDPglucose
4-epimerase (EC 5.1.3.2) (clone GEPI48) - guar
gi|3021357|emb|CAA06339.1| UDP-galactose 4-epimerase
[Cyamopsis tetragonoloba]
Length = 350
Score = 63.2 bits (152), Expect = 1e-09
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -2
Query: 472 RELKWKAKYGIEEMCRDPWNWANQNPFGYASQD 374
REL WKAKYGI+EMCRD WNWA++NP+GY +
Sbjct: 314 RELNWKAKYGIDEMCRDQWNWASKNPYGYGGSE 346
>dbj|BAC24803.1| putative UDP-glucose 4-epimerase [Oryza sativa (japonica
cultivar-group)]
Length = 408
Score = 62.8 bits (151), Expect = 2e-09
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -2
Query: 472 RELKWKAKYGIEEMCRDPWNWANQNPFGYASQD 374
+EL WKAK+GI+EMCRD WNWA++NP+GY S D
Sbjct: 323 KELNWKAKFGIDEMCRDQWNWASKNPYGYGSLD 355
>gb|AAF19668.1|AC009519_2 F1N19.2 [Arabidopsis thaliana]
Length = 447
Score = 62.4 bits (150), Expect = 2e-09
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -2
Query: 472 RELKWKAKYGIEEMCRDPWNWANQNPFGYAS 380
REL WKA +GIEEMCRD WNWA+ NPFGY S
Sbjct: 412 RELNWKANFGIEEMCRDQWNWASNNPFGYGS 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,806,595
Number of Sequences: 1393205
Number of extensions: 7558274
Number of successful extensions: 15989
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 15663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15987
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
