Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010170A_C01 KMC010170A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL10493.1| At1g48280/F11A17_25 [Arabidopsis thaliana] gi|196... 79 4e-14
ref|NP_564524.1| Expressed protein; protein id: At1g48280.1 [Ara... 79 4e-14
ref|NP_189197.1| unknown protein; protein id: At3g25690.1 [Arabi... 55 4e-07
dbj|BAB03089.1| contains similarity to pherophorin~gene_id:T5M7.... 55 4e-07
ref|NP_193591.1| unknown protein; protein id: At4g18570.1 [Arabi... 51 8e-06
>gb|AAL10493.1| At1g48280/F11A17_25 [Arabidopsis thaliana]
gi|19699351|gb|AAL91285.1| At1g48280/F11A17_25
[Arabidopsis thaliana]
Length = 200
Score = 78.6 bits (192), Expect = 4e-14
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = -1
Query: 533 DRESSQDSLLLQGVHFAYKAHQFAGGLDSETLCAFEEIRQRVPGNLAGSRELLAG 369
DRES++++LLLQGV FAY+ HQFAGGLD ETLCA EEI+QRVP +L +R +AG
Sbjct: 143 DRESTKEALLLQGVRFAYRTHQFAGGLDPETLCALEEIKQRVPSHLRLARGNMAG 197
>ref|NP_564524.1| Expressed protein; protein id: At1g48280.1 [Arabidopsis thaliana]
gi|25405258|pir||G96522 F11A17.16 [imported] -
Arabidopsis thaliana
gi|8778962|gb|AAD49768.2|AC007932_16 F11A17.16
[Arabidopsis thaliana]
Length = 558
Score = 78.6 bits (192), Expect = 4e-14
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = -1
Query: 533 DRESSQDSLLLQGVHFAYKAHQFAGGLDSETLCAFEEIRQRVPGNLAGSRELLAG 369
DRES++++LLLQGV FAY+ HQFAGGLD ETLCA EEI+QRVP +L +R +AG
Sbjct: 501 DRESTKEALLLQGVRFAYRTHQFAGGLDPETLCALEEIKQRVPSHLRLARGNMAG 555
>ref|NP_189197.1| unknown protein; protein id: At3g25690.1 [Arabidopsis thaliana]
Length = 939
Score = 55.5 bits (132), Expect = 4e-07
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = -1
Query: 533 DRESSQDSLLLQGVHFAYKAHQFAGGLDSETLCAFEEIRQR 411
D++ +++ LLLQGV FA++ HQFAGG D+E++ AFEE+R R
Sbjct: 876 DKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSR 916
>dbj|BAB03089.1| contains similarity to pherophorin~gene_id:T5M7.14 [Arabidopsis
thaliana] gi|28071265|dbj|BAC55960.1| actin binding
protein [Arabidopsis thaliana]
Length = 1004
Score = 55.5 bits (132), Expect = 4e-07
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = -1
Query: 533 DRESSQDSLLLQGVHFAYKAHQFAGGLDSETLCAFEEIRQR 411
D++ +++ LLLQGV FA++ HQFAGG D+E++ AFEE+R R
Sbjct: 941 DKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSR 981
>ref|NP_193591.1| unknown protein; protein id: At4g18570.1 [Arabidopsis thaliana]
gi|7486298|pir||T04552 hypothetical protein F28J12.220 -
Arabidopsis thaliana gi|2832661|emb|CAA16736.1|
pherophorin - like protein [Arabidopsis thaliana]
gi|7268650|emb|CAB78858.1| pherophorin-like protein
[Arabidopsis thaliana]
Length = 637
Score = 51.2 bits (121), Expect = 8e-06
Identities = 20/36 (55%), Positives = 30/36 (82%)
Frame = -1
Query: 518 QDSLLLQGVHFAYKAHQFAGGLDSETLCAFEEIRQR 411
++ L++QGV FA++ HQFAGG D+ET+ AFEE+R +
Sbjct: 578 EEELIVQGVRFAFRVHQFAGGFDAETMKAFEELRDK 613
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,136,287
Number of Sequences: 1393205
Number of extensions: 7680600
Number of successful extensions: 17408
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17406
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
