Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010166A_C01 KMC010166A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD33925.1| proline rich protein 3 [Cicer arietinum] 130 1e-29
gb|AAK32800.1|AF361632_1 At3g21211 [Arabidopsis thaliana] gi|235... 112 4e-24
dbj|BAB01713.1| gene_id:MXL8.7~unknown protein [Arabidopsis thal... 83 2e-15
ref|NP_587722.1| putative rna-binding protein [Schizosaccharomyc... 47 2e-04
gb|EAA35481.1| hypothetical protein [Neurospora crassa] 46 3e-04
>emb|CAD33925.1| proline rich protein 3 [Cicer arietinum]
Length = 284
Score = 130 bits (326), Expect = 1e-29
Identities = 61/71 (85%), Positives = 63/71 (87%)
Frame = -2
Query: 559 QERHTVCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQYSKNPFGKRKDGNIMLAVPN 380
QERHTVCFIEFEDVNSA NVHH LQGAVIPSSGSVGMRIQYSKNPFGKRKDGN +AVP
Sbjct: 214 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSVGMRIQYSKNPFGKRKDGNFPMAVPG 273
Query: 379 ANGAPPTMAYQ 347
ANGAP + YQ
Sbjct: 274 ANGAPVALTYQ 284
>gb|AAK32800.1|AF361632_1 At3g21211 [Arabidopsis thaliana] gi|23505943|gb|AAN28831.1|
At3g21211/At3g21211 [Arabidopsis thaliana]
gi|26451397|dbj|BAC42798.1| unknown protein [Arabidopsis
thaliana]
Length = 339
Score = 112 bits (279), Expect = 4e-24
Identities = 54/73 (73%), Positives = 59/73 (79%), Gaps = 2/73 (2%)
Frame = -2
Query: 559 QERHTVCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQYSKNPFGKRKDGN--IMLAV 386
QERHTVCFIEFEDVNSA NVHH LQGAVIPSSGS+GMRIQYSKNP+GKRK+G
Sbjct: 267 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSKNPYGKRKEGGGYSFFPS 326
Query: 385 PNANGAPPTMAYQ 347
P+ANGA + YQ
Sbjct: 327 PSANGAQGALTYQ 339
>dbj|BAB01713.1| gene_id:MXL8.7~unknown protein [Arabidopsis thaliana]
Length = 317
Score = 83.2 bits (204), Expect = 2e-15
Identities = 38/41 (92%), Positives = 39/41 (94%)
Frame = -2
Query: 559 QERHTVCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQY 437
QERHTVCFIEFEDVNSA NVHH LQGAVIPSSGS+GMRIQY
Sbjct: 267 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQY 307
>ref|NP_587722.1| putative rna-binding protein [Schizosaccharomyces pombe]
gi|7492934|pir||T41304 probable rna-binding protein -
fission yeast (Schizosaccharomyces pombe)
gi|2995369|emb|CAA18309.1| putative rna-binding protein
[Schizosaccharomyces pombe]
Length = 761
Score = 47.0 bits (110), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (58%)
Frame = -2
Query: 544 VCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQYSKNPFGKRKDGNI 398
+CF+EFE+V AA +QGA + G+R+ YSKNP G R N+
Sbjct: 641 MCFVEFEEVCHAAKAMEKMQGAALDDKIKGGIRLSYSKNPLGVRSTENL 689
>gb|EAA35481.1| hypothetical protein [Neurospora crassa]
Length = 530
Score = 46.2 bits (108), Expect = 3e-04
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = -2
Query: 544 VCFIEFEDVNSAANVHHTLQGAVIPSSGSVGMRIQYSKNPFGKRKDGNIMLAVPNANGAP 365
+CF+EFEDV+ A + L G + +S GMR+ +SKNP G R P NG
Sbjct: 386 MCFVEFEDVSFATKALNELYGHTLSNSRKGGMRLSFSKNPLGVRTG-----QAPGQNGPG 440
Query: 364 P 362
P
Sbjct: 441 P 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,378,341
Number of Sequences: 1393205
Number of extensions: 11107064
Number of successful extensions: 27299
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27290
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
