Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010158A_C01 KMC010158A_c01
(460 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186908.1| putative sterol-C5-desaturase; protein id: At3g... 37 0.13
gb|AAD38120.1|AF105034_1 delta7 sterol C-5 desaturase [Arabidops... 35 0.37
ref|NP_186907.1| sterol-C5-desaturase; protein id: At3g02580.1, ... 35 0.37
gb|AAM66060.1| sterol-C5-desaturase [Arabidopsis thaliana] 35 0.37
ref|NP_188833.1| S-adenosyl-L-methionine:carboxyl methyltransfer... 33 1.4
>ref|NP_186908.1| putative sterol-C5-desaturase; protein id: At3g02590.1 [Arabidopsis
thaliana] gi|6957722|gb|AAF32466.1| putative
sterol-C5-desaturase [Arabidopsis thaliana]
Length = 279
Score = 36.6 bits (83), Expect = 0.13
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = -1
Query: 238 LRSLCPLSVWEPVCHQLSSELSRFLISYHLYHAP-----YYVSYLRIN*FLFPFSFPIL* 74
L L P+++WEP+ H L + L +L LY +Y+ YL++N ++ S P
Sbjct: 24 LSHLLPVNLWEPLPHFLQTWLRNYLAGNILYFISGFLWCFYIYYLKLNVYVPKESIPTRK 83
Query: 73 SYLIDKYIFM 44
+ L+ Y+ M
Sbjct: 84 AMLLQIYVAM 93
>gb|AAD38120.1|AF105034_1 delta7 sterol C-5 desaturase [Arabidopsis thaliana]
Length = 281
Score = 35.0 bits (79), Expect = 0.37
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Frame = -1
Query: 238 LRSLCPLSVWEPVCHQLSSELSRFLISYHLYHAP-----YYVSYLRIN*FLFPFSFPIL* 74
L L P ++WEP+ H L + L +L LY +Y+ YL+IN +L + P +
Sbjct: 23 LSHLLPANLWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYYLKINVYLPKDAIPTIK 82
Query: 73 SYLIDKYIFM 44
+ + ++ M
Sbjct: 83 AMRLQMFVAM 92
>ref|NP_186907.1| sterol-C5-desaturase; protein id: At3g02580.1, supported by cDNA:
7564. [Arabidopsis thaliana] gi|4234768|gb|AAD12944.1|
sterol-C5-desaturase [Arabidopsis thaliana]
gi|6957721|gb|AAF32465.1| sterol-C5-desaturase
[Arabidopsis thaliana]
Length = 281
Score = 35.0 bits (79), Expect = 0.37
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Frame = -1
Query: 238 LRSLCPLSVWEPVCHQLSSELSRFLISYHLYHAP-----YYVSYLRIN*FLFPFSFPIL* 74
L L P ++WEP+ H L + L +L LY +Y+ YL+IN +L + P +
Sbjct: 23 LSHLLPANLWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYYLKINVYLPKDAIPTIK 82
Query: 73 SYLIDKYIFM 44
+ + ++ M
Sbjct: 83 AMRLQMFVAM 92
>gb|AAM66060.1| sterol-C5-desaturase [Arabidopsis thaliana]
Length = 281
Score = 35.0 bits (79), Expect = 0.37
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Frame = -1
Query: 238 LRSLCPLSVWEPVCHQLSSELSRFLISYHLYHAP-----YYVSYLRIN*FLFPFSFPIL* 74
L L P ++WEP+ H L + L +L LY +Y+ YL+IN +L + P +
Sbjct: 23 LSHLLPANLWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYYLKINVYLPKDAIPTIK 82
Query: 73 SYLIDKYIFM 44
+ + ++ M
Sbjct: 83 AMRLQMFVAM 92
>ref|NP_188833.1| S-adenosyl-L-methionine:carboxyl methyltransferase family; protein
id: At3g21950.1 [Arabidopsis thaliana]
Length = 335
Score = 33.1 bits (74), Expect = 1.4
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -1
Query: 355 CPPSLISLISNSDSM------FCLYRSVNSPKRSFGLQPNDCHFHLRSLCPLSVWEPVCH 194
CP S + + S S+ FCL+ P GL+ N + +LRS CP +++E +
Sbjct: 94 CPGSFYTRLFPSKSLHFVHSSFCLHWLSKVPD---GLEENKKNVYLRSPCPPNLYESYWN 150
Query: 193 QLSSELSRFL 164
Q + S FL
Sbjct: 151 QFKKDFSMFL 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,728,830
Number of Sequences: 1393205
Number of extensions: 8080498
Number of successful extensions: 17492
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17487
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
