Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010156A_C01 KMC010156A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72614.1| putative serine/threonine protein kinase [Oryza s... 51 1e-05
ref|NP_200963.1| putative protein; protein id: At5g61550.1 [Arab... 50 1e-05
gb|AAK31267.1|AC079890_3 putative protein kinase [Oryza sativa] 45 8e-04
ref|NP_194246.1| putative Ser Thr protein kinase; protein id: At... 44 0.001
pir||E86147 T1N6.4 protein - Arabidopsis thaliana gi|8671834|gb|... 44 0.002
>gb|AAO72614.1| putative serine/threonine protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 448
Score = 50.8 bits (120), Expect = 1e-05
Identities = 20/31 (64%), Positives = 28/31 (89%)
Frame = -1
Query: 549 NDNSPMTNMALPHKNLIPNYALVSAILEWKS 457
ND SPMTN+ LPHK+LIPN++L SAI++W++
Sbjct: 416 NDKSPMTNLRLPHKSLIPNHSLRSAIIDWRT 446
>ref|NP_200963.1| putative protein; protein id: At5g61550.1 [Arabidopsis thaliana]
gi|9758470|dbj|BAB08999.1| receptor kinase-like protein
[Arabidopsis thaliana]
Length = 845
Score = 50.4 bits (119), Expect = 1e-05
Identities = 21/34 (61%), Positives = 28/34 (81%)
Frame = -1
Query: 552 ENDNSPMTNMALPHKNLIPNYALVSAILEWKSSE 451
+ D SP+TN+ LP+KNLI NY L SAI+EWKS++
Sbjct: 811 QKDTSPVTNLPLPNKNLIANYTLYSAIMEWKSNK 844
>gb|AAK31267.1|AC079890_3 putative protein kinase [Oryza sativa]
Length = 782
Score = 44.7 bits (104), Expect = 8e-04
Identities = 18/32 (56%), Positives = 25/32 (77%)
Frame = -1
Query: 552 ENDNSPMTNMALPHKNLIPNYALVSAILEWKS 457
END SP+T LP+K+L+PN+AL+ AI WK+
Sbjct: 747 ENDKSPITKSRLPNKDLVPNHALLCAITSWKA 778
>ref|NP_194246.1| putative Ser Thr protein kinase; protein id: At4g25160.1
[Arabidopsis thaliana] gi|7488187|pir||T05537 probable
serine/threonine-specific protein kinase (EC 2.7.1.-)
F13M23.300 - Arabidopsis thaliana
gi|4455259|emb|CAB36758.1| putative Ser/Thr protein
kinase [Arabidopsis thaliana] gi|7269366|emb|CAB79425.1|
putative Ser/Thr protein kinase [Arabidopsis thaliana]
Length = 814
Score = 43.9 bits (102), Expect = 0.001
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = -1
Query: 552 ENDNSPMTNMALPHKNLIPNYALVSAILEWKSS 454
E++ SPMT+ L KNL+PNY L +AI+EW+S+
Sbjct: 781 EHNTSPMTDSPLHSKNLLPNYTLYTAIMEWRST 813
>pir||E86147 T1N6.4 protein - Arabidopsis thaliana
gi|8671834|gb|AAF78397.1|AC009273_3 Contains similarity
to a putative protein T2J13.100 gi|6522560 from
Arabidopsis thaliana BAC T2J13 gb|AL132967
Length = 952
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -1
Query: 549 NDNSPMTNMALPHKNLIPNYALVSAILEW 463
++ SPMTN+ L H NL+PN+AL SAI EW
Sbjct: 919 HETSPMTNLKLAHNNLVPNHALRSAIQEW 947
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,495,385
Number of Sequences: 1393205
Number of extensions: 9596356
Number of successful extensions: 21774
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 20797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21677
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
