Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010153A_C01 KMC010153A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201061.1| unknown protein; protein id: At5g62550.1 [Arabi... 123 1e-27
ref|NP_189521.1| unknown protein; protein id: At3g28790.1 [Arabi... 44 0.001
ref|NP_690450.1| Orf31 [Heliothis zea virus 1] gi|22671499|gb|AA... 43 0.002
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 42 0.004
gb|AAN86148.1| unknown protein [Arabidopsis thaliana] 41 0.009
>ref|NP_201061.1| unknown protein; protein id: At5g62550.1 [Arabidopsis thaliana]
gi|10178086|dbj|BAB11505.1| gene_id:K19B1.16~unknown
protein [Arabidopsis thaliana]
Length = 487
Score = 123 bits (309), Expect = 1e-27
Identities = 87/185 (47%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Frame = +1
Query: 37 ESDMEEPVKDQQPSSATSSGNSSRPKLQRYALRSVTKSKEEKPSAPNSSES---KRGGNA 207
E ME+ V S+ +SGNS KL RY LRS +SKE KP P+ S S +R
Sbjct: 2 EKSMEKSV------SSAASGNSINSKL-RYPLRSALRSKEGKPPVPDFSASSMPRRARVV 54
Query: 208 STVSKSVGVLDFSAKDKSGSAK-PPRRFSNPAKASPTPGHK-VASNITPISETRTGRTPY 381
S VS+S VLD S K K PPRR S P K + K V+S++T +SE + R+
Sbjct: 55 SAVSQSTTVLDLSGKKSVDRTKLPPRRLSIPNKPTSNSSVKSVSSSVTSLSEVKPKRSRI 114
Query: 382 --GQGRGKTTPISEISRTS-SRVKLNLLTSPSYWLNQIKLSESAAKHSISLGFFKLALEA 552
TTP+S R+S +R K+ L+S +YWL IKL+ES AKHSISLGFFKLAL A
Sbjct: 115 VPRSFNETTTPVSSNLRSSVTRKKVEDLSSSTYWLTHIKLAESVAKHSISLGFFKLALHA 174
Query: 553 GCEPL 567
GCEPL
Sbjct: 175 GCEPL 179
>ref|NP_189521.1| unknown protein; protein id: At3g28790.1 [Arabidopsis thaliana]
gi|11994787|dbj|BAB03177.1| gene_id:T19N8.9~unknown
protein [Arabidopsis thaliana]
gi|28973701|gb|AAO64167.1| unknown protein [Arabidopsis
thaliana]
Length = 608
Score = 43.9 bits (102), Expect = 0.001
Identities = 43/164 (26%), Positives = 65/164 (39%)
Frame = +1
Query: 31 NSESDMEEPVKDQQPSSATSSGNSSRPKLQRYALRSVTKSKEEKPSAPNSSESKRGGNAS 210
+S SD E + +++ SG+ S S T++ + S+ + E G + +
Sbjct: 202 SSSSDNESSSNTKSQGTSSKSGSESTAGSIETNTGSKTEAGSKSSSSAKTKEVSGGSSGN 261
Query: 211 TVSKSVGVLDFSAKDKSGSAKPPRRFSNPAKASPTPGHKVASNITPISETRTGRTPYGQG 390
T + G S+ S S P S P ++PTP S TP + T + P
Sbjct: 262 TYKDTTG----SSSGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPA 317
Query: 391 RGKTTPISEISRTSSRVKLNLLTSPSYWLNQIKLSESAAKHSIS 522
GKT SE S+ +K N SESAA S+S
Sbjct: 318 AGKT---SEKGSESASMKKE--------SNSKSESESAASGSVS 350
>ref|NP_690450.1| Orf31 [Heliothis zea virus 1] gi|22671499|gb|AAN04326.1|AF451898_30
Orf31 [Heliothis zea virus 1]
Length = 1145
Score = 43.1 bits (100), Expect = 0.002
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Frame = +1
Query: 16 EFRIQNSESDMEEPVKDQQPSSATSSGNSSR---------PKLQRYALRSVTKSKEEKP- 165
EF + +SD E+ K +S T+SG+++ P ++S T +K E P
Sbjct: 734 EFVESSDDSDDEDSSKPS--TSNTTSGSTAAITPPNTVTTPTTSAPPIKSTTTTKSEPPV 791
Query: 166 -SAPNSSESKRGGNASTVSKSVGVLDFSAKDKSGSAKPPRRFSNPAKASPTPGHKVAS-- 336
S P ++S ++T +KS + S PP + + P K++P P +K+ +
Sbjct: 792 KSTPPPTKSATPAKSATPAKSA--------TPNKSTPPPTKSTTPVKSTPPPTNKITTPT 843
Query: 337 -------NITPISETRTGRTPYGQGRGKTTPISEISRTSS 435
+ TP+ T T K T S S TSS
Sbjct: 844 KSATPNKSTTPVKSTPPTNTVVETDANKATDNSSASNTSS 883
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 42.4 bits (98), Expect = 0.004
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 13/153 (8%)
Frame = +1
Query: 7 PSTEFRIQNSESDMEEPVKDQQPSSATSSGNSSRPKLQRYALRSVTKSKEEKPSAPNSSE 186
PS+ +S S SS+ SS +SS + S + S S+P+SS
Sbjct: 92 PSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSS 151
Query: 187 SKRGGNASTVSKSVGVLDFSAKDKSG-------------SAKPPRRFSNPAKASPTPGHK 327
S ++S+ S S S+ SG S+ P S+P+ S +P
Sbjct: 152 SSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSS 211
Query: 328 VASNITPISETRTGRTPYGQGRGKTTPISEISR 426
+S +P + + + +P + P + + R
Sbjct: 212 SSSTSSPSTSSPSSSSPSSSSPSSSCPSAALGR 244
Score = 40.4 bits (93), Expect = 0.015
Identities = 37/140 (26%), Positives = 59/140 (41%), Gaps = 3/140 (2%)
Frame = +1
Query: 25 IQNSESDMEEPVKDQQPSSATSSGNSSRPKLQRYALR---SVTKSKEEKPSAPNSSESKR 195
I +S S P SS +SS +SS P S + S PS+ NSS S
Sbjct: 55 IPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSS 114
Query: 196 GGNASTVSKSVGVLDFSAKDKSGSAKPPRRFSNPAKASPTPGHKVASNITPISETRTGRT 375
+ S+ S S S+ S S+ S+P+ +S +P +S+ + S + + +
Sbjct: 115 SSSPSSSSSSSSSSP-SSSSSSPSSSSSSSSSSPSSSSSSPSSS-SSSSSSSSSSPSSSS 172
Query: 376 PYGQGRGKTTPISEISRTSS 435
P G ++ S S +SS
Sbjct: 173 PSSSGSSPSSSNSSPSSSSS 192
Score = 35.0 bits (79), Expect = 0.65
Identities = 28/116 (24%), Positives = 49/116 (42%)
Frame = +1
Query: 88 SSGNSSRPKLQRYALRSVTKSKEEKPSAPNSSESKRGGNASTVSKSVGVLDFSAKDKSGS 267
SS +SSR L L S S S+P+SS S ++S S S S +
Sbjct: 37 SSSSSSRSILSSSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSS-------SPSSSSST 89
Query: 268 AKPPRRFSNPAKASPTPGHKVASNITPISETRTGRTPYGQGRGKTTPISEISRTSS 435
+ P S+ + +SP+ + +S+ + + + + ++P S S +SS
Sbjct: 90 SSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSS 145
>gb|AAN86148.1| unknown protein [Arabidopsis thaliana]
Length = 873
Score = 41.2 bits (95), Expect = 0.009
Identities = 33/128 (25%), Positives = 57/128 (43%), Gaps = 6/128 (4%)
Frame = +1
Query: 28 QNSESDMEEPVKDQQPSSATSSGNSSRPKLQRYAL------RSVTKSKEEKPSAPNSSES 189
+ E+ EE ++++P SSR K ++ ++ +K KEE A SS+S
Sbjct: 743 REEEASSEEESEEEEPPKTVGKSGSSRSKKDISSVSKSGKSKASSKKKEEPSKATTSSKS 802
Query: 190 KRGGNASTVSKSVGVLDFSAKDKSGSAKPPRRFSNPAKASPTPGHKVASNITPISETRTG 369
K G S +KS K KSGSA P + + AS + + P ++ ++G
Sbjct: 803 KSGPVKSVPAKS---KTGKGKAKSGSASTPASKAKES-ASESESEETPKEPEPATKAKSG 858
Query: 370 RTPYGQGR 393
++ Q +
Sbjct: 859 KSQGSQSK 866
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.304 0.122 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,748,925
Number of Sequences: 1393205
Number of extensions: 12566889
Number of successful extensions: 27117
Number of sequences better than 10.0: 412
Number of HSP's better than 10.0 without gapping: 25369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26863
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
