Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010151A_C01 KMC010151A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201424.1| putative protein; protein id: At5g66230.1 [Arab... 87 1e-16
gb|AAL58183.1|AC027037_5 putative hypersensitive reaction and pa... 77 1e-13
ref|NP_190691.1| hypothetical protein; protein id: At3g51230.1 [... 59 5e-08
ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens] 40 0.015
sp|P87179|YB1E_SCHPO Protein C30B4.01c in chromosome II gi|74915... 39 0.043
>ref|NP_201424.1| putative protein; protein id: At5g66230.1 [Arabidopsis thaliana]
gi|26451855|dbj|BAC43020.1| unknown protein [Arabidopsis
thaliana] gi|28950901|gb|AAO63374.1| At5g66230
[Arabidopsis thaliana]
Length = 329
Score = 87.4 bits (215), Expect = 1e-16
Identities = 48/119 (40%), Positives = 67/119 (55%), Gaps = 18/119 (15%)
Frame = -1
Query: 552 SIWSMQVNAST------------------HDEDEYEDEEIAEDGSVLDELCAGLNNISVN 427
S+WSMQ NAS +DE+ Y++EE E+G ++D LC G+ +SV
Sbjct: 221 SVWSMQANASAKDEEYDDEEEEAYSYGEEYDEEYYDEEEEEEEGGIVDGLCEGIRKMSVE 280
Query: 426 ERAVPKFSGKHTRFVYNSDEELVEEVEVVMSESDSSDNVLHLMGLPTPKGKHLRFSEEE 250
F+GKHTRFVY+S++E + E + D S VL L G PTP GKH+RF+ +E
Sbjct: 281 T----DFAGKHTRFVYDSEDEEIVEAK------DQSPGVLRLKGFPTPTGKHVRFAGDE 329
>gb|AAL58183.1|AC027037_5 putative hypersensitive reaction and pathogenicity protein [Oryza
sativa] gi|18266645|gb|AAL67591.1|AC018929_13 putative
proline and glutamic acid rich nuclear protein [Oryza
sativa]
Length = 350
Score = 77.4 bits (189), Expect = 1e-13
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 22/124 (17%)
Frame = -1
Query: 552 SIWSMQVNASTH--DEDEYEDEEIAE-----------DGSVLDELCAGLNNISV------ 430
S WS+QVNAS+ DED + D++ E D D+LC G++ +SV
Sbjct: 228 SAWSIQVNASSEKGDEDTFTDQDPEEEEEEWLTEDDDDDECFDDLCEGMSKMSVFDDEEE 287
Query: 429 --NERAVPKFSGKHTRFVYNSDEELV-EEVEVVMSESDSSDNVLHLMGLPTPKGKHLRFS 259
+ +P F GKHTRF+Y+SD E+ E+V V E+ + + L GLP P+GKHLRF
Sbjct: 288 EDKKAGLPAFQGKHTRFIYDSDGEMEREDVAHVPVENCT----MVLRGLPVPEGKHLRFH 343
Query: 258 EEEE 247
E EE
Sbjct: 344 EVEE 347
>ref|NP_190691.1| hypothetical protein; protein id: At3g51230.1 [Arabidopsis
thaliana] gi|11357629|pir||T45754 hypothetical protein
F24M12.270 - Arabidopsis thaliana
gi|6562275|emb|CAB62645.1| hypothetical protein
[Arabidopsis thaliana]
Length = 230
Score = 58.5 bits (140), Expect = 5e-08
Identities = 31/66 (46%), Positives = 42/66 (62%), Gaps = 1/66 (1%)
Frame = -1
Query: 441 NISVNERAVPKFSGKHTRFVYNS-DEELVEEVEVVMSESDSSDNVLHLMGLPTPKGKHLR 265
N+ N+ +F+GKH RF+YNS D+E+VE EV LHL G+PTP+GKH R
Sbjct: 179 NVETNQA---EFAGKHNRFLYNSEDDEIVEAKEV-----------LHLKGIPTPRGKHFR 224
Query: 264 FSEEEE 247
F+ +EE
Sbjct: 225 FATQEE 230
>ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens]
Length = 252
Score = 40.4 bits (93), Expect = 0.015
Identities = 32/108 (29%), Positives = 52/108 (47%)
Frame = +2
Query: 194 PKKTTPQNQQHMKNQADFSSSSEKRRCFPLGVGNPIKCRTLSEESDSLITTSTSSTSSSS 373
P ++P + + + SS+S +P + S S S ++S+SS+SSS
Sbjct: 69 PSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSS- 127
Query: 374 LL*TNLVCFPLNLGTALSFTLMLFNPAHSSSSTDPSSAISSSSYSSSS 517
P + ++ S + + + SSSS+ PSS+ SSSS SSSS
Sbjct: 128 ---------PSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSS 166
Score = 34.3 bits (77), Expect = 1.0
Identities = 32/90 (35%), Positives = 40/90 (43%)
Frame = +2
Query: 248 SSSSEKRRCFPLGVGNPIKCRTLSEESDSLITTSTSSTSSSSLL*TNLVCFPLNLGTALS 427
SSSS +P + S S S T+S SS+SSSS S
Sbjct: 58 SSSSSSSPSSSPSSSSPSSSHSSSSPSSSSSTSSPSSSSSSS-----------------S 100
Query: 428 FTLMLFNPAHSSSSTDPSSAISSSSYSSSS 517
+ N + SSSS+ PSS+ SSSS S SS
Sbjct: 101 SSPSSSNSSSSSSSSSPSSSSSSSSSSPSS 130
Score = 32.3 bits (72), Expect = 4.0
Identities = 30/105 (28%), Positives = 47/105 (44%)
Frame = +2
Query: 203 TTPQNQQHMKNQADFSSSSEKRRCFPLGVGNPIKCRTLSEESDSLITTSTSSTSSSSLL* 382
++P + + + SSSS +P + S S ++S+SS SSSS
Sbjct: 115 SSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSS 174
Query: 383 TNLVCFPLNLGTALSFTLMLFNPAHSSSSTDPSSAISSSSYSSSS 517
+ N + S + +P+ SSSS P S+ SSS SS+S
Sbjct: 175 SGSSPSSSNSSPSSSSS----SPSSSSSSPSPRSSSPSSSSSSTS 215
>sp|P87179|YB1E_SCHPO Protein C30B4.01c in chromosome II gi|7491580|pir||T40167
hypothetical protein SPBC30B4.01c - fission yeast
(Schizosaccharomyces pombe) (fragment)
gi|3417427|emb|CAA20314.1| putative glucoamylase
[Schizosaccharomyces pombe]
Length = 344
Score = 38.9 bits (89), Expect = 0.043
Identities = 31/76 (40%), Positives = 43/76 (55%)
Frame = +2
Query: 290 GNPIKCRTLSEESDSLITTSTSSTSSSSLL*TNLVCFPLNLGTALSFTLMLFNPAHSSSS 469
GN + T+S S S TTS+SS+SS S T P + ++ S + + + SSSS
Sbjct: 89 GNGVLQTTVSSSSVSS-TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 147
Query: 470 TDPSSAISSSSYSSSS 517
+ SS+ SSSS SSSS
Sbjct: 148 SSSSSSSSSSSSSSSS 163
Score = 35.4 bits (80), Expect = 0.47
Identities = 33/105 (31%), Positives = 48/105 (45%)
Frame = +2
Query: 203 TTPQNQQHMKNQADFSSSSEKRRCFPLGVGNPIKCRTLSEESDSLITTSTSSTSSSSLL* 382
T+P + + + SSSS + S S S ++S+SS+SSSS
Sbjct: 123 TSPSSSSSSSSSSSSSSSSSSSS----------SSSSSSSSSSSSSSSSSSSSSSSSSSS 172
Query: 383 TNLVCFPLNLGTALSFTLMLFNPAHSSSSTDPSSAISSSSYSSSS 517
++ P+ T+ S HSSSS+ SS+ SSS SSSS
Sbjct: 173 SSSSSVPITSSTSSS---------HSSSSSSSSSSSSSSRPSSSS 208
Score = 33.1 bits (74), Expect = 2.3
Identities = 32/100 (32%), Positives = 47/100 (47%)
Frame = +2
Query: 236 QADFSSSSEKRRCFPLGVGNPIKCRTLSEESDSLITTSTSSTSSSSLL*TNLVCFPLNLG 415
Q SSSS +P T + S S ++S+SS+SSSS
Sbjct: 94 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSS------------S 141
Query: 416 TALSFTLMLFNPAHSSSSTDPSSAISSSSYSSSS*VLALT 535
++ S + + + SSSS+ SS+ SSSS SSSS + +T
Sbjct: 142 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT 181
Score = 31.6 bits (70), Expect = 6.8
Identities = 29/104 (27%), Positives = 51/104 (48%)
Frame = +2
Query: 206 TPQNQQHMKNQADFSSSSEKRRCFPLGVGNPIKCRTLSEESDSLITTSTSSTSSSSLL*T 385
T + + + SSSS +P + S S S ++S+SS+SSSS +
Sbjct: 95 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 154
Query: 386 NLVCFPLNLGTALSFTLMLFNPAHSSSSTDPSSAISSSSYSSSS 517
+ + ++ S + + + SSSS+ P ++ +SSS+SSSS
Sbjct: 155 S------SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSS 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,973,523
Number of Sequences: 1393205
Number of extensions: 10846577
Number of successful extensions: 58506
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 40235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49373
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
