Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010141A_C01 KMC010141A_c01
(709 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191579.1| putative protein; protein id: At3g60200.1, supp... 93 4e-18
ref|NP_181988.1| unknown protein; protein id: At2g44600.1, suppo... 85 9e-16
gb|AAL79696.1|AC087599_15 hypothetical protein [Oryza sativa] 51 1e-05
emb|CAB89584.2| possible non-canonical ubiquitin conjugating enz... 51 2e-05
pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission y... 45 8e-04
>ref|NP_191579.1| putative protein; protein id: At3g60200.1, supported by cDNA:
gi_17979088 [Arabidopsis thaliana]
gi|11280555|pir||T47844 hypothetical protein T2O9.180 -
Arabidopsis thaliana gi|7076773|emb|CAB75935.1| putative
protein [Arabidopsis thaliana]
gi|17979089|gb|AAL49812.1| unknown protein [Arabidopsis
thaliana] gi|21436193|gb|AAM51384.1| unknown protein
[Arabidopsis thaliana]
Length = 305
Score = 92.8 bits (229), Expect = 4e-18
Identities = 61/123 (49%), Positives = 80/123 (64%), Gaps = 2/123 (1%)
Frame = -2
Query: 708 RGMSPVRIEDSPDECDQCDSSETSPWWRRTPSRLVVAPSARRSRVGRGMNVTGLDIAFCL 529
RGMSPVR + P++ S+E+ RRTP+ P R+ +G G +++G+ AFCL
Sbjct: 195 RGMSPVR-DTEPEQ-----SAESIEELRRTPA--TKTPGRRKIAMGIGKSMSGM--AFCL 244
Query: 528 SPLVRASPNRRWNNK-GMPPEIAAAADVRATATP-KPHLSAAASFCANRSRKLVDFGRVN 355
SPLVRASPN + K P E + +V TA P KPH+SAAASFCANRS+KLVD GRV+
Sbjct: 245 SPLVRASPNCPFKRKMRFPSEFGNSGEV--TAVPEKPHISAAASFCANRSKKLVDLGRVD 302
Query: 354 QNR 346
+ R
Sbjct: 303 RRR 305
>ref|NP_181988.1| unknown protein; protein id: At2g44600.1, supported by cDNA:
gi_18491246 [Arabidopsis thaliana]
gi|7459477|pir||T01587 hypothetical protein At2g44600
[imported] - Arabidopsis thaliana
gi|3341680|gb|AAC27462.1| unknown protein [Arabidopsis
thaliana] gi|18491247|gb|AAL69448.1| At2g44600/F16B22.9
[Arabidopsis thaliana]
Length = 313
Score = 85.1 bits (209), Expect = 9e-16
Identities = 58/124 (46%), Positives = 76/124 (60%), Gaps = 3/124 (2%)
Frame = -2
Query: 708 RGMSPVRIEDSPDECDQCDSSETSPW-WRRTPSRLVVAPSARRSR-VGRGMNVTGLDIAF 535
RGMSP + DE S E SP RRTP ++ P +++ +G G +V+G+ AF
Sbjct: 201 RGMSPAGDSTTNDE-----SVEESPGRLRRTP--VMGTPGRKKTATIGIGRSVSGM--AF 251
Query: 534 CLSPLVRASPNRRWNNKG-MPPEIAAAADVRATATPKPHLSAAASFCANRSRKLVDFGRV 358
CLSPLVRA PN N K PP+ + ++++ A KPHLS AASFC NRS+KLVD GRV
Sbjct: 252 CLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPA--KPHLSTAASFCGNRSKKLVDLGRV 309
Query: 357 NQNR 346
+ R
Sbjct: 310 DHRR 313
>gb|AAL79696.1|AC087599_15 hypothetical protein [Oryza sativa]
Length = 292
Score = 51.2 bits (121), Expect = 1e-05
Identities = 44/116 (37%), Positives = 56/116 (47%), Gaps = 4/116 (3%)
Frame = -2
Query: 696 PVRIEDSPDECDQCDSSETSPWWRRTPSRLVVAPSARRSRVGRGMNVTGLD-IAFCLSPL 520
P ++++PD S TS WW +PS A RR G G + G+ A CLSPL
Sbjct: 186 PPPLDEAPDSPG---GSTTSSWWFPSPSP---ARQHRRRHTGVGASGDGISGFAVCLSPL 239
Query: 519 VR-ASPNRRWNNKGMPPEIAAAADVRATATPKPHLSA--AASFCANRSRKLVDFGR 361
VR S + PP+ + D T + +LSA AASF N SRKL D GR
Sbjct: 240 VRPTSGGGGGRRRCQPPDPSPLGD-----THRRNLSAGGAASFGRNTSRKLADMGR 290
>emb|CAB89584.2| possible non-canonical ubiquitin conjugating enzyme 1 [Leishmania
major]
Length = 464
Score = 50.8 bits (120), Expect = 2e-05
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +3
Query: 414 PRGEASASRWP*HPPPPQSPVAFPYCSTSGSG*PEPEDSDKKQYPNPSRSSPALPGSAAP 593
P EA + P PPPP +P A S +PED++ Q + SSPA P SA P
Sbjct: 178 PEKEAQVPKLPPPPPPPATPAA--------SAMAKPEDAEATQDAPDTASSPAPPPSATP 229
Query: 594 KA---PPPISTASSATTAKSPTSHTDRIHRENPLFSPA 698
+ PPP + +S T AK+P + ++ SPA
Sbjct: 230 SSTLLPPPTAADASETAAKAPDAPQSHNAPKDTPSSPA 267
>pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission yeast
(Schizosaccharomyces pombe) gi|2708709|gb|AAB92587.1|
Wiskott-Aldrich Syndrome protein homolog
[Schizosaccharomyces pombe]
Length = 574
Score = 45.4 bits (106), Expect = 8e-04
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +3
Query: 384 GNGSRKTT-----PLPRGEASASRWP*HPPPPQ---SPVAFPYCSTSGSG*PEPEDSDKK 539
GNGS ++ P PR A+ S P PPQ +P P S +G P S +
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSI----PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSR 383
Query: 540 QYPNPSRSSPALPGSAAPKAPPPISTASSATTAKSPT 650
NP PA+PG +AP A PP+ AS +T PT
Sbjct: 384 AVSNPPAPPPAIPGRSAP-ALPPLGNASRTSTPPVPT 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 648,377,940
Number of Sequences: 1393205
Number of extensions: 17191440
Number of successful extensions: 114229
Number of sequences better than 10.0: 1112
Number of HSP's better than 10.0 without gapping: 74703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103465
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
