Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010135A_C01 KMC010135A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05420.1| putative RING protein [Populus x canescens] 114 1e-24
gb|AAO00789.1| putative RING zinc finger protein [Arabidopsis th... 73 3e-12
ref|NP_192260.1| E3 ubiquitin ligase, RMA1; protein id: At4g0351... 65 5e-10
ref|NP_194556.1| putative protein; protein id: At4g28270.1 [Arab... 55 7e-07
ref|NP_194477.1| putative RING zinc finger protein; protein id: ... 51 1e-05
>gb|AAN05420.1| putative RING protein [Populus x canescens]
Length = 233
Score = 114 bits (285), Expect = 1e-24
Identities = 64/138 (46%), Positives = 83/138 (59%)
Frame = -1
Query: 599 PPRPPASGAQALLGTSSSSQNSQQQQQLQYRNPYQGQYFSSPLYQEEDDDATSQMFNLGA 420
PPRP A GAQ ++ +S++ Q+L YRNPY+ +++ Y ++ + S + NLG
Sbjct: 110 PPRPSACGAQGVVSNTSNTG-----QRLPYRNPYRNHNYNANPYGSFEEASPSPLLNLGD 164
Query: 419 STMTTPGSHPHPVVGMFGEMVFARVFGNSENLYANPNSHQLMRSNGSRMRRQEMQADKFL 240
MT P VGMF EMV+ARVFG PNS+ LM + R+RR E+ ADK L
Sbjct: 165 PAMT---GLQQPAVGMFREMVYARVFGPF------PNSYHLMGTGSPRLRRHELMADKSL 215
Query: 239 NRISIFLLCCFFLCLIFF 186
NRISIFL CCF LCLI F
Sbjct: 216 NRISIFLFCCFLLCLIVF 233
>gb|AAO00789.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 243
Score = 72.8 bits (177), Expect = 3e-12
Identities = 48/137 (35%), Positives = 62/137 (45%)
Frame = -1
Query: 596 PRPPASGAQALLGTSSSSQNSQQQQQLQYRNPYQGQYFSSPLYQEEDDDATSQMFNLGAS 417
PR PA A TS+SS N Q Q + + QY E D + +
Sbjct: 128 PRRPAPSALRNPITSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMM---- 183
Query: 416 TMTTPGSHPHPVVGMFGEMVFARVFGNSENLYANPNSHQLMRSNGSRMRRQEMQADKFLN 237
S +PV+GMFG++V+ R+FG N A P Q M MQ +K LN
Sbjct: 184 ------SFLYPVIGMFGDLVYTRIFGTFTNTIAQPYQSQRM-----------MQREKSLN 226
Query: 236 RISIFLLCCFFLCLIFF 186
R+SIF LCC LCL+ F
Sbjct: 227 RVSIFFLCCIILCLLLF 243
>ref|NP_192260.1| E3 ubiquitin ligase, RMA1; protein id: At4g03510.1, supported by
cDNA: gi_3164221 [Arabidopsis thaliana]
gi|25354184|pir||T52142 RING finger protein RMA1
[validated] - Arabidopsis thaliana
gi|3164222|dbj|BAA28598.1| RMA1 [Arabidopsis thaliana]
gi|4206205|gb|AAD11593.1|AAD11593 RMA1 RING zinc finger
protein [Arabidopsis thaliana]
gi|7270674|emb|CAB77836.1| RMA1 RING zinc finger protein
[Arabidopsis thaliana] gi|28392896|gb|AAO41884.1|
putative E3 ubiquitin ligase, RMA1 [Arabidopsis
thaliana] gi|28827754|gb|AAO50721.1| putative E3
ubiquitin ligase, RMA1 [Arabidopsis thaliana]
Length = 249
Score = 65.5 bits (158), Expect = 5e-10
Identities = 33/68 (48%), Positives = 45/68 (65%), Gaps = 1/68 (1%)
Frame = -1
Query: 386 PVVGMFGEMVFARVFGNSE-NLYANPNSHQLMRSNGSRMRRQEMQADKFLNRISIFLLCC 210
PV+ M GEMV R+FG + +A P+++ L ++G RMRR+ MQADK L RI F +CC
Sbjct: 182 PVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCC 241
Query: 209 FFLCLIFF 186
LCL+ F
Sbjct: 242 VVLCLLLF 249
>ref|NP_194556.1| putative protein; protein id: At4g28270.1 [Arabidopsis thaliana]
gi|7486197|pir||T09043 hypothetical protein F26K10.150 -
Arabidopsis thaliana gi|1773040|gb|AAC49830.1| RING zinc
finger protein [Arabidopsis thaliana]
gi|7269681|emb|CAB79629.1| putative protein [Arabidopsis
thaliana] gi|27764994|gb|AAO23618.1| At4g28270
[Arabidopsis thaliana]
Length = 193
Score = 55.1 bits (131), Expect = 7e-07
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = -1
Query: 392 PHPVVGMFGEMVFARVFGNSENLYANPNSHQLMRSNGSRMRRQEMQADKFLNRISIFLLC 213
P PV+G+ EMV+ R+FG S + A R R RR+ MQA++ L+R+ +FLLC
Sbjct: 131 PDPVMGVVCEMVYRRLFGESSSNMAP------YRDMNVRSRRRAMQAEESLSRVYLFLLC 184
Query: 212 CFFLCLIFF 186
F+CL F
Sbjct: 185 FMFMCLFLF 193
>ref|NP_194477.1| putative RING zinc finger protein; protein id: At4g27470.1
[Arabidopsis thaliana] gi|7488309|pir||T08939 RING zinc
finger protein F27G19.70 - Arabidopsis thaliana
gi|4972072|emb|CAB43879.1| putative RING zinc finger
protein [Arabidopsis thaliana]
gi|7269601|emb|CAB81397.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 264
Score = 51.2 bits (121), Expect = 1e-05
Identities = 39/128 (30%), Positives = 54/128 (41%)
Frame = -1
Query: 596 PRPPASGAQALLGTSSSSQNSQQQQQLQYRNPYQGQYFSSPLYQEEDDDATSQMFNLGAS 417
PR PA A TS+SS N Q Q + + QY E D + +
Sbjct: 140 PRRPAPSALRNPITSASSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMM---- 195
Query: 416 TMTTPGSHPHPVVGMFGEMVFARVFGNSENLYANPNSHQLMRSNGSRMRRQEMQADKFLN 237
S +PV+GMFG++V+ R+FG N A P Q M MQ +K LN
Sbjct: 196 ------SFLYPVIGMFGDLVYTRIFGTFTNTIAQPYQSQRM-----------MQREKSLN 238
Query: 236 RISIFLLC 213
R +++ C
Sbjct: 239 RYVMYIGC 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,617,535
Number of Sequences: 1393205
Number of extensions: 11479764
Number of successful extensions: 40820
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 36546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40168
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
