Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010092A_C01 KMC010092A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA67969.1| MADS5 protein [Betula pendula] 133 2e-30
gb|AAC83170.1| MADS-box protein 2 [Malus x domestica] 120 1e-26
gb|AAF19721.1|AF176782_1 MADS box transcription factor [Petunia ... 115 6e-25
gb|AAF19164.1|AF176783_1 floral binding protein 26 [Petunia x hy... 113 2e-24
gb|AAD39036.1|AF068725_1 MADS-box protein MADS1 [Nicotiana sylve... 112 5e-24
>emb|CAA67969.1| MADS5 protein [Betula pendula]
Length = 244
Score = 133 bits (334), Expect = 2e-30
Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Frame = -1
Query: 624 NLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIKEKEKAITTQEEQE 445
NLEQQLDSALKHIRSRKNQ ++ESISELQ+KDKALQEQNN+L KK+KEKEK + Q + E
Sbjct: 127 NLEQQLDSALKHIRSRKNQLMYESISELQRKDKALQEQNNVLAKKVKEKEKELAQQAQWE 186
Query: 444 GLQNSANVASGLVTQPLE-SMNIGGSPEARCDERTPTPTPTPTRANTINLPPWMLRPTN 271
++ + L+ QPL+ S+NIGGS +AR + R TP P RAN + LPPWMLR N
Sbjct: 187 QQSHTLDSVPSLLPQPLQSSLNIGGSQQARGNGRVDEGTP-PHRANAL-LPPWMLRHLN 243
>gb|AAC83170.1| MADS-box protein 2 [Malus x domestica]
Length = 255
Score = 120 bits (301), Expect = 1e-26
Identities = 70/130 (53%), Positives = 85/130 (64%), Gaps = 11/130 (8%)
Frame = -1
Query: 624 NLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIKEKEKAITTQEEQE 445
NLEQQLDSALKHIRSRKNQ ++ESISELQKKDKALQEQNNLL KK+KEKE A+ Q + E
Sbjct: 127 NLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKEKENAVAQQAQLE 186
Query: 444 GLQNS-ANVASGLVTQPLESMNIGGSPE---ARCDERTP-------TPTPTPTRANTINL 298
+Q N +S L+ + L+S+N G R E P TPTP R N + L
Sbjct: 187 HVQEQRLNSSSSLLPRALQSLNFGSGSNYQAIRSSEGIPGDNQQYGDETPTPHRPNML-L 245
Query: 297 PPWMLRPTND 268
P W++R N+
Sbjct: 246 PAWIVRHLNE 255
>gb|AAF19721.1|AF176782_1 MADS box transcription factor [Petunia x hybrida]
Length = 246
Score = 115 bits (287), Expect = 6e-25
Identities = 66/121 (54%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
Frame = -1
Query: 624 NLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIKEKEKAIT--TQEE 451
NLEQQLDS+LKHIRSRKNQ + ESISELQKKDK+LQEQNNLL+KK+KE+EK + TQ E
Sbjct: 127 NLEQQLDSSLKHIRSRKNQLMHESISELQKKDKSLQEQNNLLSKKVKEREKELAQQTQWE 186
Query: 450 QEGLQNSANVASGLV-TQPLESMNIGGSPEARCDERTPTPTPTPTRANTINLPPWMLRPT 274
Q+ + N +S V QPL+S ++G + ++ D ANT +PPWMLR
Sbjct: 187 QQNNHHEINSSSSFVLPQPLDSPHLGEAYQSTVDNGEVEGASQQQPANT--MPPWMLRHL 244
Query: 273 N 271
N
Sbjct: 245 N 245
>gb|AAF19164.1|AF176783_1 floral binding protein 26 [Petunia x hybrida]
Length = 245
Score = 113 bits (283), Expect = 2e-24
Identities = 61/118 (51%), Positives = 81/118 (67%)
Frame = -1
Query: 624 NLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIKEKEKAITTQEEQE 445
NLEQQLDSALK IRSRKNQ + ESISELQKKDKALQEQNN L+K++KE+EK + Q + E
Sbjct: 128 NLEQQLDSALKQIRSRKNQLMHESISELQKKDKALQEQNNKLSKQVKEREKELAQQSQWE 187
Query: 444 GLQNSANVASGLVTQPLESMNIGGSPEARCDERTPTPTPTPTRANTINLPPWMLRPTN 271
+ N +S +++QPL S+++G + + D + NT+ +PPWMLR N
Sbjct: 188 PQSHDLNSSSFVLSQPLNSLHLGEAYPSAGDNGEVEGSSRQQPPNTV-MPPWMLRHLN 244
>gb|AAD39036.1|AF068725_1 MADS-box protein MADS1 [Nicotiana sylvestris]
Length = 245
Score = 112 bits (279), Expect = 5e-24
Identities = 64/120 (53%), Positives = 83/120 (68%), Gaps = 2/120 (1%)
Frame = -1
Query: 624 NLEQQLDSALKHIRSRKNQALFESISELQKKDKALQEQNNLLTKKIKEKEKAIT--TQEE 451
NLE QLDSALKHIRSRKNQ + ESISELQKKDKALQEQNN L+K++KE+EK + TQ E
Sbjct: 127 NLEHQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNNLSKQVKEREKELAQQTQWE 186
Query: 450 QEGLQNSANVASGLVTQPLESMNIGGSPEARCDERTPTPTPTPTRANTINLPPWMLRPTN 271
Q+ + N +S ++TQPL S+++G + D + + NT+ +PPWMLR N
Sbjct: 187 QQS-HDHLNSSSFVLTQPLSSLHLGEAYPTAGDNGEVEGSSRQQQQNTV-MPPWMLRHLN 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,852,043
Number of Sequences: 1393205
Number of extensions: 11754022
Number of successful extensions: 49065
Number of sequences better than 10.0: 526
Number of HSP's better than 10.0 without gapping: 41183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47448
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
