Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010091A_C01 KMC010091A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201169.1| putative protein; protein id: At5g63640.1, supp... 100 7e-21
ref|NP_495343.1| Putative nuclear protein of bilaterial origin [... 37 0.089
emb|CAC18259.1| conserved hypothetical protein [Neurospora crass... 37 0.12
ref|NP_558880.1| hypothetical protein [Pyrobaculum aerophilum] g... 35 0.34
ref|XP_234039.1| similar to E-cadherin binding protein E7 [Mus m... 35 0.57
>ref|NP_201169.1| putative protein; protein id: At5g63640.1, supported by cDNA:
gi_17065013 [Arabidopsis thaliana]
gi|10177045|dbj|BAB10457.1|
gb|AAF26070.1~gene_id:MBK5.12~similar to unknown protein
[Arabidopsis thaliana] gi|17065014|gb|AAL32661.1|
Unknown protein [Arabidopsis thaliana]
gi|21387125|gb|AAM47966.1| unknown protein [Arabidopsis
thaliana]
Length = 447
Score = 100 bits (250), Expect = 7e-21
Identities = 60/116 (51%), Positives = 73/116 (62%), Gaps = 4/116 (3%)
Frame = -2
Query: 485 KPQDEE--TKPE-YPSLGLLEERLNRPLIRPLASEPSREANARPAPAVVPPPNSNHGREL 315
+P+DEE + P+ P + ERLNRPLIRPL PS EA+ PP
Sbjct: 345 RPEDEEEPSPPQGLPGSAIHNERLNRPLIRPL---PSEEASRGGDSHSQSPP-------- 393
Query: 314 SHLAIPPPPTKHIERERYFQENKKDGTT-LAGHLRGLSLHSYNGSSSHSGSFDFSD 150
+ IPPPP KH+ERE++F+ENK DG L GH+RGLSLHS +GSSS SGS DFSD
Sbjct: 394 --VVIPPPPAKHVEREKFFKENKGDGALGLPGHMRGLSLHSRDGSSSRSGSVDFSD 447
>ref|NP_495343.1| Putative nuclear protein of bilaterial origin [Caenorhabditis
elegans] gi|7452544|pir||T15854 hypothetical protein
C56C10.12 - Caenorhabditis elegans
gi|868250|gb|AAA68780.1| Hypothetical protein C56C10.12
[Caenorhabditis elegans]
Length = 1599
Score = 37.4 bits (85), Expect = 0.089
Identities = 28/93 (30%), Positives = 41/93 (43%), Gaps = 2/93 (2%)
Frame = -2
Query: 464 KPEYPSLGLLEERLNRPLIRPLASEPSREANARPAPAVVPPPNSNHGRELSHLAIPPPPT 285
+PE + L E+ L R ASEP ++ + P PPP + RE A P PP
Sbjct: 55 EPEDQDISLTEDSLKREE----ASEPLKDVRSSPVRPAPPPPRVSQERE----APPIPPR 106
Query: 284 KHI--ERERYFQENKKDGTTLAGHLRGLSLHSY 192
I E++K+ TT R +++ SY
Sbjct: 107 SMIFPRSTSMVAESRKESTTAVAPKRSVAVASY 139
>emb|CAC18259.1| conserved hypothetical protein [Neurospora crassa]
gi|28922749|gb|EAA31972.1| hypothetical protein
[Neurospora crassa]
Length = 2084
Score = 37.0 bits (84), Expect = 0.12
Identities = 20/58 (34%), Positives = 29/58 (49%)
Frame = -2
Query: 425 LNRPLIRPLASEPSREANARPAPAVVPPPNSNHGRELSHLAIPPPPTKHIERERYFQE 252
LN+P+ P A PS+ A P P PPP S + PPP + +E++F+E
Sbjct: 640 LNKPVTAPAAPPPSKSATHLPPP---PPPTSVPHSSQPGVKPPPPRGEAKPKEKFFEE 694
>ref|NP_558880.1| hypothetical protein [Pyrobaculum aerophilum]
gi|18159653|gb|AAL63062.1| hypothetical protein
[Pyrobaculum aerophilum]
Length = 263
Score = 35.4 bits (80), Expect = 0.34
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Frame = -2
Query: 473 EETKPEYPSLGLLEERLNRPL---IRPLASEPSREANARPAPAVVPPPNSNHGRELSHLA 303
E + E+P L LE +P+ ++P+A EP+ RP PP + L+ A
Sbjct: 107 ERARAEFPELSTLELVPPKPVPSPVQPVAVEPAPPLEVRPVAPPEPP------KPLTPPA 160
Query: 302 IPPPP 288
+PPPP
Sbjct: 161 VPPPP 165
>ref|XP_234039.1| similar to E-cadherin binding protein E7 [Mus musculus] [Rattus
norvegicus]
Length = 556
Score = 34.7 bits (78), Expect = 0.57
Identities = 20/69 (28%), Positives = 33/69 (46%), Gaps = 8/69 (11%)
Frame = -2
Query: 428 RLNRPLIRPLASEPSREANARPAPAVVP-----PPNSNHGREL---SHLAIPPPPTKHIE 273
R +P+ R AS + P P +P PP+ +H + H+ +PPPP +H+
Sbjct: 257 RAGKPVTR--ASLENVHPPIAPPPTEIPDRFIMPPDKHHMSHIPPKQHIMMPPPPLQHVP 314
Query: 272 RERYFQENK 246
E Y Q ++
Sbjct: 315 HEHYNQPHE 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,274,082
Number of Sequences: 1393205
Number of extensions: 9372999
Number of successful extensions: 39158
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 33874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38431
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
