Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010089A_C01 KMC010089A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192182.1| G-protein beta family; protein id: At4g02730.1,... 108 4e-23
gb|AAH08547.1| Unknown (protein for IMAGE:3591165) [Mus musculus] 98 5e-20
ref|NP_060058.1| WD repeat domain 5 protein; WD-repeat protein 5... 98 5e-20
emb|CAB66159.1| hypothetical protein [Homo sapiens] 98 5e-20
ref|NP_061942.2| WD repeat domain 5B [Homo sapiens] gi|27695090|... 98 6e-20
>ref|NP_192182.1| G-protein beta family; protein id: At4g02730.1, supported by cDNA:
41490., supported by cDNA: gi_16612251 [Arabidopsis
thaliana] gi|25387430|pir||G85034 probable WD-repeat
protein [imported] - Arabidopsis thaliana
gi|4263521|gb|AAD15347.1| putative WD-repeat protein
[Arabidopsis thaliana] gi|7269758|emb|CAB77758.1|
putative WD-repeat protein [Arabidopsis thaliana]
gi|16612252|gb|AAL27497.1|AF439825_1 AT4g02730/T5J8_2
[Arabidopsis thaliana] gi|21593699|gb|AAM65666.1|
putative WD-repeat protein [Arabidopsis thaliana]
gi|21928079|gb|AAM78068.1| AT4g02730/T5J8_2 [Arabidopsis
thaliana]
Length = 333
Score = 108 bits (270), Expect = 4e-23
Identities = 46/67 (68%), Positives = 59/67 (87%)
Frame = -3
Query: 509 SVTNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRT 330
SVTNG+YIVSGSED CVYLWDLQ +N++Q+LEGHTD VISV+CHP +N+I+S+G D+T
Sbjct: 266 SVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDKT 325
Query: 329 VRVWVQD 309
+R+W QD
Sbjct: 326 IRIWKQD 332
Score = 33.5 bits (75), Expect = 1.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 500 NGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRV 321
+G + S S D+ + LW ++I + EGH+ + + + SA D T+R+
Sbjct: 54 DGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYTCSA--SDDCTLRI 111
Query: 320 W 318
W
Sbjct: 112 W 112
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = -3
Query: 488 IVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVW 318
IVSGS D + +W+++ ++ ++ H+ + SV + + I SA DG + ++W
Sbjct: 143 IVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDG--SCKIW 197
>gb|AAH08547.1| Unknown (protein for IMAGE:3591165) [Mus musculus]
Length = 199
Score = 98.2 bits (243), Expect = 5e-20
Identities = 42/67 (62%), Positives = 54/67 (79%)
Frame = -3
Query: 509 SVTNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRT 330
SVT G++IVSGSED VY+W+LQ K ++QKL+GHTD VIS CHPTEN IASA L+ D+T
Sbjct: 132 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 191
Query: 329 VRVWVQD 309
+++W D
Sbjct: 192 IKLWKSD 198
Score = 37.0 bits (84), Expect = 0.13
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -3
Query: 488 IVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVW 318
IVSGS D V +WD++ ++ L H+D V +V + + I S+ DG R+W
Sbjct: 9 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIW 63
>ref|NP_060058.1| WD repeat domain 5 protein; WD-repeat protein 5 [Homo sapiens]
gi|16554629|ref|NP_438172.1| WD repeat domain 5 protein;
WD-repeat protein 5; likely ortholog of mouse WD repeat
protein BIG-3 (BMP-2-induced gene 3 kb) [Homo sapiens]
gi|18252790|ref|NP_543124.1| WD repeat domain 5;
Bmp2-induced gene [Mus musculus]
gi|20141972|sp|Q9UGP9|WDR5_HUMAN WD-repeat protein 5 (WD
repeat protein BIG-3) gi|7020724|dbj|BAA91248.1| unnamed
protein product [Homo sapiens]
gi|12804457|gb|AAH01635.1|AAH01635 Similar to
hypothetical protein [Homo sapiens]
gi|16359284|gb|AAH16103.1| Similar to hypothetical
protein [Mus musculus]
gi|16589079|gb|AAL27006.1|AF416510_1 WD repeat protein
BIG-3 [Mus musculus] gi|19388008|gb|AAH25801.1| Similar
to WD repeat domain 5 [Mus musculus]
gi|26344836|dbj|BAC36067.1| unnamed protein product [Mus
musculus]
Length = 334
Score = 98.2 bits (243), Expect = 5e-20
Identities = 42/67 (62%), Positives = 54/67 (79%)
Frame = -3
Query: 509 SVTNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRT 330
SVT G++IVSGSED VY+W+LQ K ++QKL+GHTD VIS CHPTEN IASA L+ D+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326
Query: 329 VRVWVQD 309
+++W D
Sbjct: 327 IKLWKSD 333
Score = 42.0 bits (97), Expect = 0.004
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = -3
Query: 503 TNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVR 324
++ +VS S+D+ + +WD+ ++ L+GH++ V +P N I S D +VR
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVR 154
Query: 323 VW 318
+W
Sbjct: 155 IW 156
Score = 37.0 bits (84), Expect = 0.13
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -3
Query: 488 IVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVW 318
IVSGS D V +WD++ ++ L H+D V +V + + I S+ DG R+W
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIW 198
Score = 33.5 bits (75), Expect = 1.5
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -3
Query: 500 NGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRV 321
NG ++ S S D+ + +W + + GH + V N + SA D+T+++
Sbjct: 56 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA--SDDKTLKI 113
Query: 320 W 318
W
Sbjct: 114 W 114
>emb|CAB66159.1| hypothetical protein [Homo sapiens]
Length = 362
Score = 98.2 bits (243), Expect = 5e-20
Identities = 42/67 (62%), Positives = 54/67 (79%)
Frame = -3
Query: 509 SVTNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRT 330
SVT G++IVSGSED VY+W+LQ K ++QKL+GHTD VIS CHPTEN IASA L+ D+T
Sbjct: 295 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 354
Query: 329 VRVWVQD 309
+++W D
Sbjct: 355 IKLWKSD 361
Score = 42.0 bits (97), Expect = 0.004
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = -3
Query: 503 TNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVR 324
++ +VS S+D+ + +WD+ ++ L+GH++ V +P N I S D +VR
Sbjct: 125 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVR 182
Query: 323 VW 318
+W
Sbjct: 183 IW 184
Score = 37.0 bits (84), Expect = 0.13
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = -3
Query: 488 IVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVW 318
IVSGS D V +WD++ ++ L H+D V +V + + I S+ DG R+W
Sbjct: 172 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIW 226
Score = 33.5 bits (75), Expect = 1.5
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -3
Query: 500 NGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRV 321
NG ++ S S D+ + +W + + GH + V N + SA D+T+++
Sbjct: 84 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA--SDDKTLKI 141
Query: 320 W 318
W
Sbjct: 142 W 142
>ref|NP_061942.2| WD repeat domain 5B [Homo sapiens] gi|27695090|gb|AAH43494.1| WD
repeat domain 5B [Homo sapiens]
Length = 330
Score = 97.8 bits (242), Expect = 6e-20
Identities = 41/67 (61%), Positives = 55/67 (81%)
Frame = -3
Query: 509 SVTNGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRT 330
SVT G++IVSGSED VY+W+LQ K ++QKL+GHTD VIS CHPTEN IASA L+ D+T
Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKT 322
Query: 329 VRVWVQD 309
+++W+ +
Sbjct: 323 IKLWMSN 329
Score = 42.7 bits (99), Expect = 0.002
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = -3
Query: 488 IVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVW 318
+VS S+D+ + LWD++ ++ L+GH++ V +P N I S D TV++W
Sbjct: 98 LVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSF--DETVKIW 152
Score = 35.4 bits (80), Expect = 0.38
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = -3
Query: 488 IVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRVW 318
I+SGS D V +W+++ ++ L H+D V +V + + + I S DG R+W
Sbjct: 140 IISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDG--LCRIW 194
Score = 34.3 bits (77), Expect = 0.86
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 500 NGRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTVISVTCHPTENKIASAGLDGDRTVRV 321
NG ++ S S DR + +W + L GH + V +++ SA D+T+++
Sbjct: 52 NGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSA--SDDKTLKL 109
Query: 320 W 318
W
Sbjct: 110 W 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,482,393
Number of Sequences: 1393205
Number of extensions: 10336800
Number of successful extensions: 28989
Number of sequences better than 10.0: 1723
Number of HSP's better than 10.0 without gapping: 23745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28658
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
