Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010087A_C01 KMC010087A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61395.1| putative P-protein: chorismate mutase, prephenate... 55 1e-07
ref|NP_187420.1| putative P-protein: chorismate mutase, prephena... 55 1e-07
gb|AAK68844.1| Unknown protein [Arabidopsis thaliana] gi|2014839... 42 0.002
ref|NP_172644.1| putative chloroplast prephenate dehydratase; pr... 42 0.002
ref|NP_180350.1| putative chorismate mutase/prephenate dehydrata... 40 0.006
>gb|AAM61395.1| putative P-protein: chorismate mutase, prephenate dehydratase
[Arabidopsis thaliana]
Length = 381
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -2
Query: 445 DQSAQNALRHLKEFATFLRVLGSYPLDTSM 356
D+ AQNALRHL+EFATFLRVLGSYP+DT+M
Sbjct: 351 DEVAQNALRHLEEFATFLRVLGSYPVDTTM 380
>ref|NP_187420.1| putative P-protein: chorismate mutase, prephenate dehydratase;
protein id: At3g07630.1, supported by cDNA: 118932.,
supported by cDNA: gi_21280852 [Arabidopsis thaliana]
gi|6466946|gb|AAF13081.1|AC009176_8 putative P-protein:
chorismate mutase, prephenate dehydratase [Arabidopsis
thaliana] gi|15292759|gb|AAK92748.1| putative P-protein:
chorismate mutase, prephenate dehydratase [Arabidopsis
thaliana] gi|21280853|gb|AAM45015.1| putative P-protein
[Arabidopsis thaliana]
Length = 381
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -2
Query: 445 DQSAQNALRHLKEFATFLRVLGSYPLDTSM 356
D+ AQNALRHL+EFATFLRVLGSYP+DT+M
Sbjct: 351 DEVAQNALRHLEEFATFLRVLGSYPVDTTM 380
>gb|AAK68844.1| Unknown protein [Arabidopsis thaliana] gi|20148399|gb|AAM10090.1|
unknown protein [Arabidopsis thaliana]
Length = 392
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/27 (62%), Positives = 23/27 (84%)
Frame = -2
Query: 445 DQSAQNALRHLKEFATFLRVLGSYPLD 365
D AQ+AL HL+EFA+F+R+LG YP+D
Sbjct: 363 DTRAQHALGHLQEFASFIRILGCYPMD 389
>ref|NP_172644.1| putative chloroplast prephenate dehydratase; protein id:
At1g11790.1, supported by cDNA: gi_14596232, supported
by cDNA: gi_20148398 [Arabidopsis thaliana]
gi|25402686|pir||A86252 hypothetical protein [imported]
- Arabidopsis thaliana
gi|4835776|gb|AAD30242.1|AC007296_3 Similar to
gi|2392772 T32N15.11 putative chloroplast prephenate
dehydratase from Arabidopsis thaliana BAC gb|AC002534
and is a member of the PF|00800 Prephenate dehydratase
family. ESTs gb|T21562 and gb|T21062 come from this
gene
Length = 392
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/27 (62%), Positives = 23/27 (84%)
Frame = -2
Query: 445 DQSAQNALRHLKEFATFLRVLGSYPLD 365
D AQ+AL HL+EFA+F+R+LG YP+D
Sbjct: 363 DTRAQHALGHLQEFASFIRILGCYPMD 389
>ref|NP_180350.1| putative chorismate mutase/prephenate dehydratase; protein id:
At2g27820.1, supported by cDNA: 37739. [Arabidopsis
thaliana] gi|25407925|pir||D84677 hypothetical protein
At2g27820 [imported] - Arabidopsis thaliana
gi|3860250|gb|AAC73018.1| putative chorismate
mutase/prephenate dehydratase [Arabidopsis thaliana]
Length = 424
Score = 40.0 bits (92), Expect = 0.006
Identities = 17/27 (62%), Positives = 22/27 (80%)
Frame = -2
Query: 445 DQSAQNALRHLKEFATFLRVLGSYPLD 365
+ AQNAL ++EF +FLRVLGSYP+D
Sbjct: 380 ESRAQNALSEVQEFTSFLRVLGSYPMD 406
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,019,776
Number of Sequences: 1393205
Number of extensions: 7011482
Number of successful extensions: 13998
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 13500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13907
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
