Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010083A_C01 KMC010083A_c01
(709 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK64512.1| Hsp70 interacting protein/thioredoxin chimera [Vi... 203 2e-51
gb|AAL54858.1| tetratricoredoxin [Nicotiana tabacum] 195 5e-49
gb|AAL54856.1| tetratricoredoxin [Arabidopsis thaliana] gi|18041... 181 9e-45
gb|AAM60989.1| tetratricoredoxin [Arabidopsis thaliana] 179 3e-44
ref|NP_188415.1| thioredoxin, putative; protein id: At3g17880.1 ... 171 7e-42
>gb|AAK64512.1| Hsp70 interacting protein/thioredoxin chimera [Vitis labrusca]
Length = 385
Score = 203 bits (516), Expect = 2e-51
Identities = 97/134 (72%), Positives = 113/134 (83%)
Frame = -1
Query: 700 QKKSQPKKQQQAEAQDQEALSALKDGQVISIHSGGELETKLGAASKTSRLAILYFTATWC 521
+K K+QQQA+ D EA +ALKDGQV++IHS ELETKL AASKTSRLAILYFTATWC
Sbjct: 250 RKYGHQKQQQQAQPHDPEAAAALKDGQVMAIHSSSELETKLKAASKTSRLAILYFTATWC 309
Query: 520 GPCRFISPIYTSLAEKYPKVVFLKVDIDEARDVAARWNISSVPSFFFVKNGKEVDSAVGA 341
GPCR+ISP++TSL+ KYPKVVFLKVDID A+DVA WN+SSVP+FFF+KNGKE+D VG
Sbjct: 310 GPCRYISPVFTSLSGKYPKVVFLKVDIDGAQDVAVSWNVSSVPTFFFIKNGKEIDKVVGV 369
Query: 340 DKSTLERKIIQHAG 299
DKS LE KI Q+AG
Sbjct: 370 DKSALETKIAQYAG 383
>gb|AAL54858.1| tetratricoredoxin [Nicotiana tabacum]
Length = 386
Score = 195 bits (496), Expect = 5e-49
Identities = 93/137 (67%), Positives = 111/137 (80%)
Frame = -1
Query: 709 QKGQKKSQPKKQQQAEAQDQEALSALKDGQVISIHSGGELETKLGAASKTSRLAILYFTA 530
+K +KK Q Q Q +A D ++ S L G++I IHS ELETKL AS+ SRLAILYFTA
Sbjct: 253 EKDEKKEQ---QSQHKASDPDSASVLNGGKIIGIHSVSELETKLNVASRASRLAILYFTA 309
Query: 529 TWCGPCRFISPIYTSLAEKYPKVVFLKVDIDEARDVAARWNISSVPSFFFVKNGKEVDSA 350
TWCGPCRFISP++TSLAEKYPK FLK DIDEARD A+RWN+SSVP+FFF+KNGKEVD
Sbjct: 310 TWCGPCRFISPVFTSLAEKYPKAAFLKADIDEARDAASRWNVSSVPAFFFIKNGKEVDRV 369
Query: 349 VGADKSTLERKIIQHAG 299
VGADK+ LE+KI+Q+AG
Sbjct: 370 VGADKNLLEKKIVQYAG 386
>gb|AAL54856.1| tetratricoredoxin [Arabidopsis thaliana] gi|18041546|gb|AAL54857.1|
tetratricoredoxin [Arabidopsis thaliana]
Length = 380
Score = 181 bits (459), Expect = 9e-45
Identities = 85/138 (61%), Positives = 114/138 (82%)
Frame = -1
Query: 709 QKGQKKSQPKKQQQAEAQDQEALSALKDGQVISIHSGGELETKLGAASKTSRLAILYFTA 530
+K ++++ ++++Q EAQ++EA +AL DG+VISIHS ELE K AA K SRL ILYFTA
Sbjct: 242 EKELQRAERERRKQQEAQEREAQAALNDGEVISIHSTSELEAKTKAAKKASRLLILYFTA 301
Query: 529 TWCGPCRFISPIYTSLAEKYPKVVFLKVDIDEARDVAARWNISSVPSFFFVKNGKEVDSA 350
TWCGPCR++SP+Y++LA ++ +VVFLKVDID+A DVAA WNISSVP+F F+++GKEVD
Sbjct: 302 TWCGPCRYMSPLYSNLATQHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVDKV 361
Query: 349 VGADKSTLERKIIQHAGS 296
VGADK +LE+KI QH+ S
Sbjct: 362 VGADKGSLEQKIAQHSSS 379
>gb|AAM60989.1| tetratricoredoxin [Arabidopsis thaliana]
Length = 380
Score = 179 bits (454), Expect = 3e-44
Identities = 84/138 (60%), Positives = 113/138 (81%)
Frame = -1
Query: 709 QKGQKKSQPKKQQQAEAQDQEALSALKDGQVISIHSGGELETKLGAASKTSRLAILYFTA 530
+K ++++ ++++Q EAQ++EA +AL DG+VISIHS ELE K AA K SRL ILYFTA
Sbjct: 242 EKELQRAERERRKQQEAQEREAQAALNDGEVISIHSTSELEAKTKAAKKASRLLILYFTA 301
Query: 529 TWCGPCRFISPIYTSLAEKYPKVVFLKVDIDEARDVAARWNISSVPSFFFVKNGKEVDSA 350
TWCGPCR++SP+Y++LA ++ + VFLKVDID+A DVAA WNISSVP+F F+++GKEVD
Sbjct: 302 TWCGPCRYMSPLYSNLATQHSRFVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVDKV 361
Query: 349 VGADKSTLERKIIQHAGS 296
VGADK +LE+KI QH+ S
Sbjct: 362 VGADKGSLEQKIAQHSSS 379
>ref|NP_188415.1| thioredoxin, putative; protein id: At3g17880.1 [Arabidopsis
thaliana]
Length = 123
Score = 171 bits (434), Expect = 7e-42
Identities = 81/121 (66%), Positives = 101/121 (82%)
Frame = -1
Query: 658 QDQEALSALKDGQVISIHSGGELETKLGAASKTSRLAILYFTATWCGPCRFISPIYTSLA 479
Q++EA +AL DG+VISIHS ELE K AA K SRL ILYFTATWCGPCR++SP+Y++LA
Sbjct: 2 QEREAQAALNDGEVISIHSTSELEAKTKAAKKASRLLILYFTATWCGPCRYMSPLYSNLA 61
Query: 478 EKYPKVVFLKVDIDEARDVAARWNISSVPSFFFVKNGKEVDSAVGADKSTLERKIIQHAG 299
++ +VVFLKVDID+A DVAA WNISSVP+F F+++GKEVD VGADK +LE+KI QH+
Sbjct: 62 TQHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVDKVVGADKGSLEQKIAQHSS 121
Query: 298 S 296
S
Sbjct: 122 S 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,210,922
Number of Sequences: 1393205
Number of extensions: 12634833
Number of successful extensions: 31867
Number of sequences better than 10.0: 1037
Number of HSP's better than 10.0 without gapping: 30019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31429
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
