Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010081A_C01 KMC010081A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84671 hypothetical protein At2g27350 [imported] - Arabidop... 150 5e-36
ref|NP_565648.1| expressed protein; protein id: At2g27350.1, sup... 150 5e-36
emb|CAD40583.1| oj000126_13.5 [Oryza sativa (japonica cultivar-g... 124 7e-28
emb|CAC83955.1| Oikosin4B [Oikopleura dioica] 34 0.72
ref|NP_659136.1| RIKEN cDNA 1110032A17 [Mus musculus] gi|2820209... 33 1.2
>pir||H84671 hypothetical protein At2g27350 [imported] - Arabidopsis thaliana
Length = 522
Score = 150 bits (380), Expect = 5e-36
Identities = 83/121 (68%), Positives = 98/121 (80%), Gaps = 2/121 (1%)
Frame = -2
Query: 478 YSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKESSTSNAEPSSSGARSSGRDPKME 299
YSDLELTEKEIER+V+EASRAEY+ + K ++G KESSTSNAE SSSGAR SG D K
Sbjct: 403 YSDLELTEKEIERSVMEASRAEYLM-EWSKPRIGPKESSTSNAETSSSGARPSGSDSKPA 461
Query: 298 PVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLET--GSSSRRKGKAT 125
+ + LS S++MVLSMGFSY QA+EAYSIFGDDVDSM+CY+LET G ++RRKGKAT
Sbjct: 462 EAVKEKTVLSSSIEMVLSMGFSYAQAMEAYSIFGDDVDSMVCYVLETSCGGNNRRKGKAT 521
Query: 124 E 122
E
Sbjct: 522 E 522
>ref|NP_565648.1| expressed protein; protein id: At2g27350.1, supported by cDNA:
gi_16604333 [Arabidopsis thaliana]
gi|16604334|gb|AAL24173.1| At2g27350/F12K2.7
[Arabidopsis thaliana] gi|20197675|gb|AAD41995.2|
expressed protein [Arabidopsis thaliana]
gi|27311747|gb|AAO00839.1| expressed protein
[Arabidopsis thaliana]
Length = 505
Score = 150 bits (380), Expect = 5e-36
Identities = 83/121 (68%), Positives = 98/121 (80%), Gaps = 2/121 (1%)
Frame = -2
Query: 478 YSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKESSTSNAEPSSSGARSSGRDPKME 299
YSDLELTEKEIER+V+EASRAEY+ + K ++G KESSTSNAE SSSGAR SG D K
Sbjct: 386 YSDLELTEKEIERSVMEASRAEYLM-EWSKPRIGPKESSTSNAETSSSGARPSGSDSKPA 444
Query: 298 PVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLET--GSSSRRKGKAT 125
+ + LS S++MVLSMGFSY QA+EAYSIFGDDVDSM+CY+LET G ++RRKGKAT
Sbjct: 445 EAVKEKTVLSSSIEMVLSMGFSYAQAMEAYSIFGDDVDSMVCYVLETSCGGNNRRKGKAT 504
Query: 124 E 122
E
Sbjct: 505 E 505
>emb|CAD40583.1| oj000126_13.5 [Oryza sativa (japonica cultivar-group)]
Length = 550
Score = 124 bits (310), Expect = 7e-28
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 14/133 (10%)
Frame = -2
Query: 478 YSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKESSTSNAEPSSSGA-----RSSGR 314
YSDLELTEKEIER V+EASRAEY+ + QL ++ESSTS AEPSSS A RS+G
Sbjct: 420 YSDLELTEKEIERMVMEASRAEYLKQQ--QQQLNFRESSTSGAEPSSSAAISGSSRSAGT 477
Query: 313 DPKM--EPVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLE------- 161
++ E D+ L+ SMQ++L+MGF+Y+Q +EAYSIFG+DVDSMI YL+E
Sbjct: 478 ADRVGEECFVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGEDVDSMIYYLVEMGGTGAS 537
Query: 160 TGSSSRRKGKATE 122
G S+RRKGKA E
Sbjct: 538 AGGSNRRKGKAAE 550
>emb|CAC83955.1| Oikosin4B [Oikopleura dioica]
Length = 296
Score = 34.3 bits (77), Expect = 0.72
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 400 DTFKHQLGYKESSTSNAEPSSSGARSSGRDPKMEPVKENDSGLSWSMQMVLSMGF 236
++F++ SS+S + SSS + SSGR + EP KE D S + V GF
Sbjct: 92 NSFEYSSSSSGSSSSYSSSSSSSSYSSGRKRRSEPEKEEDGKYSPDLVNVSDHGF 146
>ref|NP_659136.1| RIKEN cDNA 1110032A17 [Mus musculus]
gi|28202099|sp|Q8VDZ4|ZDH5_MOUSE Zinc finger DHHC domain
containing protein 5 gi|18043276|gb|AAH20051.1| Unknown
(protein for MGC:28179) [Mus musculus]
gi|26349747|dbj|BAC38513.1| unnamed protein product [Mus
musculus]
Length = 715
Score = 33.5 bits (75), Expect = 1.2
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 394 FKHQLGYKESSTSNAEPSSSGARSSGRDPKMEPVKENDS 278
+K++ GY SSTS A P SS A+ S D EP DS
Sbjct: 352 YKYRPGYSSSSTSAAMPHSSSAKLSRGDSLKEPTSIADS 390
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,450,682
Number of Sequences: 1393205
Number of extensions: 7350697
Number of successful extensions: 18161
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18137
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
