Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010063A_C01 KMC010063A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32762.1| 3-phosphoinositide-dependent protein kinase-1, pu... 80 3e-14
gb|AAF76360.1| 3-phosphoinositide-dependent protein kinase-1, pu... 67 3e-10
ref|NP_056287.1| transcriptional co-activator with PDZ-binding m... 33 2.7
ref|NP_598545.1| RIKEN cDNA 2310058J06 [Mus musculus] gi|1155839... 33 2.7
emb|CAD38711.1| hypothetical protein [Homo sapiens] 33 2.7
>gb|AAL32762.1| 3-phosphoinositide-dependent protein kinase-1, putative
[Arabidopsis thaliana] gi|20260034|gb|AAM13364.1|
3-phosphoinositide-dependent protein kinase-1, putative
[Arabidopsis thaliana]
Length = 333
Score = 80.1 bits (196), Expect = 3e-14
Identities = 39/89 (43%), Positives = 60/89 (66%), Gaps = 1/89 (1%)
Frame = -1
Query: 620 KLSERVET-CFWCFRSINLKFGTAKFVISSGKIMLGCLILFFYYVFRKKQATLKRIVTRQ 444
KLS++ E W ++LK G +F +S GK+ + + L Y ++K+A L RI+ RQ
Sbjct: 240 KLSKQHEPWSLWSSHPLSLKVGNTQFSMSRGKVAVSLVGLIICYALKRKRAALIRIIRRQ 299
Query: 443 MIAMKRALVDFWQLAFSYQVNPLAAVEPL 357
M + ++A+VDFW+LAFSYQVNPLAA++ +
Sbjct: 300 MESTRKAIVDFWKLAFSYQVNPLAAIQSI 328
>gb|AAF76360.1| 3-phosphoinositide-dependent protein kinase-1, putative
[Arabidopsis thaliana]
Length = 431
Score = 66.6 bits (161), Expect = 3e-10
Identities = 33/79 (41%), Positives = 51/79 (63%), Gaps = 1/79 (1%)
Frame = -1
Query: 620 KLSERVET-CFWCFRSINLKFGTAKFVISSGKIMLGCLILFFYYVFRKKQATLKRIVTRQ 444
KLS++ E W ++LK G +F +S GK+ + + L Y ++K+A L RI+ RQ
Sbjct: 240 KLSKQHEPWSLWSSHPLSLKVGNTQFSMSRGKVAVSLVGLIICYALKRKRAALIRIIRRQ 299
Query: 443 MIAMKRALVDFWQLAFSYQ 387
M + ++A+VDFW+LAFSYQ
Sbjct: 300 MESTRKAIVDFWKLAFSYQ 318
>ref|NP_056287.1| transcriptional co-activator with PDZ-binding motif (TAZ) [Homo
sapiens] gi|10433354|dbj|BAB13957.1| unnamed protein
product [Homo sapiens] gi|11558400|emb|CAC17722.1|
transcriptional coactivator [Homo sapiens]
gi|15559368|gb|AAH14052.1|AAH14052 transcriptional
co-activator with PDZ-binding motif (TAZ) [Homo sapiens]
Length = 400
Score = 33.5 bits (75), Expect = 2.7
Identities = 20/47 (42%), Positives = 27/47 (56%), Gaps = 3/47 (6%)
Frame = +2
Query: 338 LDVPQQRVVRQLPED*LDTKMQAAKN---RPKPSSWRSFVLLQSFLK 469
L P Q+V+ + LDT ++A N PKPSSWR +L +SF K
Sbjct: 10 LPPPGQQVIHVTQD--LDTDLEALFNSVMNPKPSSWRKKILPESFFK 54
>ref|NP_598545.1| RIKEN cDNA 2310058J06 [Mus musculus] gi|11558398|emb|CAC17733.1|
transcriptional coactivator [Mus musculus]
Length = 395
Score = 33.5 bits (75), Expect = 2.7
Identities = 20/47 (42%), Positives = 27/47 (56%), Gaps = 3/47 (6%)
Frame = +2
Query: 338 LDVPQQRVVRQLPED*LDTKMQAAKN---RPKPSSWRSFVLLQSFLK 469
L P Q+V+ + LDT ++A N PKPSSWR +L +SF K
Sbjct: 10 LPPPGQQVIHVTQD--LDTDLEALFNSVMNPKPSSWRKKILPESFFK 54
>emb|CAD38711.1| hypothetical protein [Homo sapiens]
Length = 398
Score = 33.5 bits (75), Expect = 2.7
Identities = 20/47 (42%), Positives = 27/47 (56%), Gaps = 3/47 (6%)
Frame = +2
Query: 338 LDVPQQRVVRQLPED*LDTKMQAAKN---RPKPSSWRSFVLLQSFLK 469
L P Q+V+ + LDT ++A N PKPSSWR +L +SF K
Sbjct: 8 LPPPGQQVIHVTQD--LDTDLEALFNSVMNPKPSSWRKKILPESFFK 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,397,170
Number of Sequences: 1393205
Number of extensions: 10384984
Number of successful extensions: 23866
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23861
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
