Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010030A_C01 KMC010030A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_228723.1| ribonuclease HII [Thermotoga maritima] gi|72279... 32 4.9
ref|NP_505127.1| Putative plasma membrane membrane protein famil... 31 6.4
>ref|NP_228723.1| ribonuclease HII [Thermotoga maritima]
gi|7227928|sp|Q9X017|RNH2_THEMA Ribonuclease HII (RNase
HII) gi|7435243|pir||B72320 ribonuclease HII -
Thermotoga maritima (strain MSB8)
gi|4981451|gb|AAD35996.1|AE001755_19 ribonuclease HII
[Thermotoga maritima]
Length = 238
Score = 31.6 bits (70), Expect = 4.9
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 166 TRIIGSLLVLSKLNPNLIQLQILNPNSNFLFYSHKSWQKREH--DINQIGILPVPIINME 339
+++IG+ +++K+ + + + F F+ HK + +EH +I + G+LP+ ++ E
Sbjct: 127 SKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRLSFE 186
Query: 340 YV 345
V
Sbjct: 187 PV 188
>ref|NP_505127.1| Putative plasma membrane membrane protein family member, with at
least 5 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7496147|pir||T29556
hypothetical protein C16D9.7 - Caenorhabditis elegans
gi|1465847|gb|AAB18286.1| Hypothetical protein C16D9.7
[Caenorhabditis elegans]
Length = 254
Score = 31.2 bits (69), Expect = 6.4
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -3
Query: 344 TYSMFMIGTGRIPIWLMSCSLFCHDLWL*NKKLELGFRICSCIKF-GFSLLSTSSEPIIL 168
TY +F+ G + L CS F + L L N+ + + S F G+ PII
Sbjct: 31 TYPVFIYFLGLAGLGLWCCSCFMNILLLVNRTMNIANSSLSRYFFDGYRTYIALLAPIIY 90
Query: 167 VLYFTRFFPVKLF 129
LYF F P +F
Sbjct: 91 GLYFVFFTPTCMF 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,906,666
Number of Sequences: 1393205
Number of extensions: 8464674
Number of successful extensions: 17820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17815
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
