Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010029A_C01 KMC010029A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96825 hypothetical protein T8K14.14 [imported] - Arabidops... 72 4e-12
ref|NP_178062.1| succinic semialdehyde dehydrogenase (gabD), put... 72 4e-12
ref|NP_248956.1| succinate-semialdehyde dehydrogenase [Pseudomon... 62 4e-09
ref|ZP_00086388.1| hypothetical protein [Pseudomonas fluorescens... 62 5e-09
ref|ZP_00092162.1| hypothetical protein [Azotobacter vinelandii] 62 5e-09
>pir||E96825 hypothetical protein T8K14.14 [imported] - Arabidopsis thaliana
gi|4835765|gb|AAD30232.1|AC007202_14 Is a member of the
PF|00171 aldehyde dehydrogenase family. ESTs gb|T21534,
gb|N65241 and gb|AA395614 come from this gene.
[Arabidopsis thaliana]
Length = 509
Score = 72.0 bits (175), Expect = 4e-12
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = -2
Query: 517 VAPFGGFKPSGLGREGSQYGMDEYLEIKYVCLGNMNK 407
VAPFGG K SGLGREGS+YGMDEYLEIKYVCLG+MN+
Sbjct: 472 VAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGDMNR 508
>ref|NP_178062.1| succinic semialdehyde dehydrogenase (gabD), putative; protein id:
At1g79440.1, supported by cDNA: gi_15810164, supported
by cDNA: gi_16226914, supported by cDNA: gi_6684441
[Arabidopsis thaliana]
gi|6684442|gb|AAF23590.1|AF117335_1 succinic
semialdehyde dehydrogenase [Arabidopsis thaliana]
gi|15810165|gb|AAL07226.1| putative succinic
semialdehyde dehydrogenase gabD [Arabidopsis thaliana]
gi|16226915|gb|AAL16297.1|AF428367_1 At1g79440/T8K14_14
[Arabidopsis thaliana]
Length = 528
Score = 72.0 bits (175), Expect = 4e-12
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = -2
Query: 517 VAPFGGFKPSGLGREGSQYGMDEYLEIKYVCLGNMNK 407
VAPFGG K SGLGREGS+YGMDEYLEIKYVCLG+MN+
Sbjct: 491 VAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGDMNR 527
>ref|NP_248956.1| succinate-semialdehyde dehydrogenase [Pseudomonas aeruginosa PA01]
gi|11352602|pir||D83613 succinate-semialdehyde
dehydrogenase PA0265 [imported] - Pseudomonas aeruginosa
(strain PAO1) gi|9946106|gb|AAG03654.1|AE004464_7
succinate-semialdehyde dehydrogenase [Pseudomonas
aeruginosa PAO1]
Length = 483
Score = 62.0 bits (149), Expect = 4e-09
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = -2
Query: 517 VAPFGGFKPSGLGREGSQYGMDEYLEIKYVCLGNM 413
VAPFGG K SGLGREGS+YG+++YLEIKY+CLG +
Sbjct: 449 VAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGGI 483
>ref|ZP_00086388.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 487
Score = 61.6 bits (148), Expect = 5e-09
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = -2
Query: 517 VAPFGGFKPSGLGREGSQYGMDEYLEIKYVCLG 419
VAPFGG K SGLGREGS+YG+++YLEIKY+CLG
Sbjct: 454 VAPFGGIKASGLGREGSKYGIEDYLEIKYLCLG 486
>ref|ZP_00092162.1| hypothetical protein [Azotobacter vinelandii]
Length = 689
Score = 61.6 bits (148), Expect = 5e-09
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = -2
Query: 517 VAPFGGFKPSGLGREGSQYGMDEYLEIKYVCLGNM 413
VAPFGG K SGLGREGS+YG+++YLEIKY+CLG +
Sbjct: 655 VAPFGGVKASGLGREGSKYGIEDYLEIKYLCLGGI 689
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,882,602
Number of Sequences: 1393205
Number of extensions: 10732159
Number of successful extensions: 27375
Number of sequences better than 10.0: 680
Number of HSP's better than 10.0 without gapping: 26506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27365
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
