Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010020A_C01 KMC010020A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA18357.1| translation initiation factor IF-2 [Plasmodium yo... 34 1.5
ref|NP_705098.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.5
ref|NP_192218.1| NDX1 homeobox protein homolog; protein id: At4g... 32 5.6
pir||S51908 cryptogene protein G1(ND9) - Leishmania tarentolae (... 32 5.6
ref|NP_705378.1| sexual stage-specific protein kinase [Plasmodiu... 32 5.6
>gb|EAA18357.1| translation initiation factor IF-2 [Plasmodium yoelii yoelii]
Length = 1103
Score = 33.9 bits (76), Expect = 1.5
Identities = 28/108 (25%), Positives = 48/108 (43%), Gaps = 5/108 (4%)
Frame = +3
Query: 81 LMLELHNILYNFPNDIQEK*KIAEIKLH---PNGTKNNTSIKYPFLQNNKIKGEK*FSDS 251
+++ HNI+Y NDI++ LH P Y ++NNK KG++
Sbjct: 963 VVIRSHNIIYELYNDIEQICNFYFDSLHLYEPVSKMTINKTGYYSIKNNK-KGKRVVLSV 1021
Query: 252 FHADPDPNPRCSVPLFHPKEIIENNFLI--KRKKSVIIQKLIKSCNSN 389
D N + + K++I+ N I +K + +L K+CN+N
Sbjct: 1022 DIKDGVCNSSHTYNVIRNKQVIQKNLTILSMQKNKQNVNELTKTCNTN 1069
>ref|NP_705098.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615343|emb|CAD52334.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 960
Score = 33.1 bits (74), Expect = 2.5
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +3
Query: 159 LHPNGTKNNTSIKYPFLQNNKIKGEK*FSDSFHADP 266
LHPN NN S KY +++NN E S ++H+ P
Sbjct: 778 LHPNYMFNNNSHKYDYMRNNLHNKENVISQNYHSLP 813
>ref|NP_192218.1| NDX1 homeobox protein homolog; protein id: At4g03090.1 [Arabidopsis
thaliana] gi|7487652|pir||T01384 hypothetical protein
T4I9.3 - Arabidopsis thaliana gi|3924595|gb|AAC79096.1|
predicted protein of unknown function [Arabidopsis
thaliana] gi|7270179|emb|CAB77794.1| NDX1 homeobox
protein homolog [Arabidopsis thaliana]
Length = 925
Score = 32.0 bits (71), Expect = 5.6
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Frame = -1
Query: 277 GFGSGSAWKLSENYFSPFILLFWRKGYLIDVL--------FFVPFGCSLISAIFYFSCMS 122
G S S +Y F+LL + L DVL FF ++SA+F C+S
Sbjct: 375 GLSKASMATASPDYPMGFVLLNAMR--LADVLTDDSNFRSFFTEHFSMVLSAVF---CLS 429
Query: 121 FGKLYKMLCNSNINS*RMELDVVY-IFKILCCVVSSIS 11
G MLC+S+++S + +V Y +FK ++S S
Sbjct: 430 HGDFLSMLCSSDLSSREDDANVDYDLFKSAGWILSVFS 467
>pir||S51908 cryptogene protein G1(ND9) - Leishmania tarentolae (strain LEM125)
Length = 196
Score = 32.0 bits (71), Expect = 5.6
Identities = 26/93 (27%), Positives = 44/93 (46%), Gaps = 17/93 (18%)
Frame = -2
Query: 249 YQRITFLLLFYCFGGRGI*LMY----YFLFHLGVV*FLLFFIFPVCHL------------ 118
++ + LLLF+C R + L + + F+L V FL F +F +L
Sbjct: 14 FRCVFVLLLFFCLCCRWVFLCFVDCSFVFFYLFVCFFLFFVMFLFFNLWFFLLYCLDLFC 73
Query: 117 -ENCTKCYVTLTLILNVWNLMLCIFLRFCVVLC 22
+ C C+V LI ++ L+LC + F V++C
Sbjct: 74 IDFCGFCFVRFILIYVLFCLLLCFRVSF-VLIC 105
>ref|NP_705378.1| sexual stage-specific protein kinase [Plasmodium falciparum 3D7]
gi|23615623|emb|CAD52615.1| sexual stage-specific protein
kinase [Plasmodium falciparum 3D7]
Length = 1807
Score = 32.0 bits (71), Expect = 5.6
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = +3
Query: 168 NGTKNNTSIKYPFLQNNKIKGEK*FSDSFHADPDPNPR-----CSVPLFHPKEIIENNFL 332
N N K + N K K + F+D+FH D + + + ++ IENN
Sbjct: 1466 NKNINGEDYKNTDMNNEKRKDQNIFTDNFHMDESSSMQHVPHVDDINYIEQEDNIENNTK 1525
Query: 333 IKRKKSVIIQKLIKSCNSNPHTTLKQEKKLESI*SIHLSTSYP 461
K KK+ + +N TL++ KK++ + ++ + +P
Sbjct: 1526 YKNKKN-------NNDINNSSDTLQRNKKIKKMANLEIFRYFP 1561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,153,829
Number of Sequences: 1393205
Number of extensions: 11628662
Number of successful extensions: 25194
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25169
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
