Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010001A_C01 KMC010001A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_612765.1| UL135 [Chimpanzee cytomegalovirus] gi|19881152|... 35 0.51
ref|XP_162935.1| hypothetical protein XP_162935 [Mus musculus] g... 35 0.66
ref|NP_593094.1| putative transcription initiation factor tfiid ... 35 0.66
ref|NP_572506.1| CG12075-PA [Drosophila melanogaster] gi|1786236... 34 0.87
ref|NP_032585.1| melanocortin 1 receptor [Mus musculus] gi|40028... 33 1.9
>ref|NP_612765.1| UL135 [Chimpanzee cytomegalovirus]
gi|19881152|gb|AAM00772.1|AF480884_124 UL135 [chimpanzee
cytomegalovirus]
Length = 387
Score = 35.0 bits (79), Expect = 0.51
Identities = 26/93 (27%), Positives = 36/93 (37%), Gaps = 10/93 (10%)
Frame = +1
Query: 100 PQLCKQ*DSPTTYSEVNQQHN----------PLNWRQTRVYDPAYNNTTMPHQQNKNRPI 249
P C SP++ E +QH P+ T + P T +P N
Sbjct: 171 PPPCPSPSSPSSLGEALEQHRQLLKSRPPTPPVRAPSTHLTVPTVPPTPLPRTVPTNGVE 230
Query: 250 TPLIGDNYNTYEPAHSSKTKPHQQKQGPANNPK 348
TPL+ N + PA P ++KQGP PK
Sbjct: 231 TPLVKVTANGHPPA-----APGRKKQGPPTKPK 258
>ref|XP_162935.1| hypothetical protein XP_162935 [Mus musculus]
gi|28527433|ref|XP_289484.1| hypothetical protein
XP_289484 [Mus musculus]
Length = 203
Score = 34.7 bits (78), Expect = 0.66
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = -3
Query: 331 VLVFAGVAWFCCCVQVHKCCSCLQLRGLLAGSCFVGVAWLCCCMQG 194
V V G A C C Q CC C+ R +A S G A LC C QG
Sbjct: 61 VSVSPGPALLCLCHQGQHCCVCV-TRASIAVSVSPGPALLCLCHQG 105
Score = 34.7 bits (78), Expect = 0.66
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = -3
Query: 331 VLVFAGVAWFCCCVQVHKCCSCLQLRGLLAGSCFVGVAWLCCCMQG 194
V V G A C C Q CC C+ R +A S G A LC C QG
Sbjct: 119 VSVSPGPALLCLCHQGQHCCVCV-TRASIAVSVSPGPALLCLCHQG 163
Score = 33.5 bits (75), Expect = 1.5
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = -3
Query: 331 VLVFAGVAWFCCCVQVHKCCSCLQLRGLLAGSCFVGVAWLCCCMQG 194
V V G A C C Q CC C+ R +A S G A LC C QG
Sbjct: 90 VSVSPGPALLCLCHQGLHCCVCV-TRASIAVSVSPGPALLCLCHQG 134
>ref|NP_593094.1| putative transcription initiation factor tfiid 145 kd subunit
[Schizosaccharomyces pombe]
gi|1174555|sp|Q09813|T111_SCHPO Putative transcription
initiation factor TFIID 111 kDa subunit (TBP-associated
factor 111 kDa) (TAFII-111) gi|2130399|pir||S62469
probable transcription initiation factor tfiid subunit -
fission yeast (Schizosaccharomyces pombe)
gi|1019412|emb|CAA91179.1| putative transcription
initiation factor tfiid 145 kd subunit
[Schizosaccharomyces pombe]
Length = 979
Score = 34.7 bits (78), Expect = 0.66
Identities = 19/56 (33%), Positives = 30/56 (52%)
Frame = +1
Query: 91 LLKPQLCKQ*DSPTTYSEVNQQHNPLNWRQTRVYDPAYNNTTMPHQQNKNRPITPL 258
LL+PQL K+ DS ++++ +Q+ N L W+ DPAY HQ ++ L
Sbjct: 333 LLQPQLPKKEDSQRSFADTHQR-NSLAWKFNISNDPAYEMLKQNHQSKVRNTLSQL 387
>ref|NP_572506.1| CG12075-PA [Drosophila melanogaster] gi|17862360|gb|AAL39657.1|
LD23217p [Drosophila melanogaster]
gi|22833029|gb|AAF46414.2| CG12075-PA [Drosophila
melanogaster]
Length = 857
Score = 34.3 bits (77), Expect = 0.87
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Frame = +1
Query: 94 LKPQLCKQ*DSPTTYSEVNQQ--------HNPLNWRQTRVYDPAYN--NTTMPHQQNKNR 243
+KP + + D ++ V QQ H P R T Y+ N + H+ ++R
Sbjct: 355 IKPIIMRPADYDAKFNRVMQQEQQQAAVNHQPAKLRDTDKYNEINRLLNKKLAHEPTRDR 414
Query: 244 PITPLIGDNYNTYE---PAHSSKTKPHQQKQGPANNPKDARVNAGIKAQY 384
+ DN++ ++ P S HQQ QGP + + N K ++
Sbjct: 415 KSRSRLDDNHDDFDDSDPGSESLPLHHQQTQGPPVHHHQRKENLTDKQKF 464
>ref|NP_032585.1| melanocortin 1 receptor [Mus musculus]
gi|400280|sp|Q01727|MSHR_MOUSE MELANOCYTE STIMULATING
HORMONE RECEPTOR (MSH-R) (MELANOTROPIN RECEPTOR)
(MELANOCORTIN-1 RECEPTOR) (MC1-R) gi|110690|pir||S25581
melanocyte-stimulating hormone receptor - mouse
gi|53245|emb|CAA46589.1| melanocyte stimulating hormone
receptor [Mus musculus]
Length = 315
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -2
Query: 239 FLFCWCGMVVLLYAGS*TRVCLQLRGLCCWFTSLYVVGLSYCLHNCGLSRL*ISLYFSC- 63
F ++ +LYA TR C ++G+ + +CL + + ++F C
Sbjct: 193 FFLAMLALMAILYAHMFTRACQHVQGIAQLHKRRRSIRQGFCLKGAATLTILLGIFFLCW 252
Query: 62 ------LLLYLNMGQHPLC 24
LLL + QHP C
Sbjct: 253 GPFFLHLLLIVLCPQHPTC 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,705,236
Number of Sequences: 1393205
Number of extensions: 10072201
Number of successful extensions: 35719
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35500
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
