Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009976A_C01 KMC009976A_c01
(743 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565198.1| replicase, putative; protein id: At1g79050.1, s... 71 1e-11
pir||A46259 recombination protein recA homolog - Arabidopsis tha... 71 1e-11
sp|P48293|RECA_SPIPL RecA protein (Recombinase A) gi|976445|gb|A... 62 1e-08
sp|P33542|RECA_AQUPY RecA protein (Recombinase A) gi|1086167|pir... 60 4e-08
gb|ZP_00040629.1| hypothetical protein [Xylella fastidiosa Ann-1] 58 2e-07
>ref|NP_565198.1| replicase, putative; protein id: At1g79050.1, supported by cDNA:
gi_15292902, supported by cDNA: gi_21281180 [Arabidopsis
thaliana] gi|2500098|sp|Q39199|RECA_ARATH DNA repair
protein recA, chloroplast precursor
gi|7443882|pir||T01050 hypothetical protein YUP8H12R.33
- Arabidopsis thaliana gi|289208|gb|AAA61781.1| DNA
repair protein gi|3152570|gb|AAC17051.1| Match to
nuclear-encoded chloroplast DNA repair protein (E. coli
recA homolog) gb|L15229. [Arabidopsis thaliana]
gi|15292903|gb|AAK92822.1| putative replicase
[Arabidopsis thaliana] gi|21281181|gb|AAM45008.1|
putative replicase [Arabidopsis thaliana]
Length = 439
Score = 71.2 bits (173), Expect = 1e-11
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 741 KKGSWYSYGDQRLGQGRDKAIQYLNENPHLLHEVEKIVRSSLIDGTNQTSLGYMKFSPT- 565
KKGSWYSY DQRLGQGR+KA+Q+L ENP L E+EK VR ++DG S M S +
Sbjct: 364 KKGSWYSYEDQRLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTPLMSSSSSS 423
Query: 564 ---LHQDDDDTFEEAQ 526
++++D+ ++ Q
Sbjct: 424 ASHREEEEEDSLDDFQ 439
>pir||A46259 recombination protein recA homolog - Arabidopsis thaliana
(fragment) gi|166841|gb|AAA32855.1| replicase
Length = 438
Score = 71.2 bits (173), Expect = 1e-11
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = -3
Query: 741 KKGSWYSYGDQRLGQGRDKAIQYLNENPHLLHEVEKIVRSSLIDGTNQTSLGYMKFSPT- 565
KKGSWYSY DQRLGQGR+KA+Q+L ENP L E+EK VR ++DG S M S +
Sbjct: 363 KKGSWYSYEDQRLGQGREKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTPLMSSSSSS 422
Query: 564 ---LHQDDDDTFEEAQ 526
++++D+ ++ Q
Sbjct: 423 ASHREEEEEDSLDDFQ 438
>sp|P48293|RECA_SPIPL RecA protein (Recombinase A) gi|976445|gb|AAA75282.1| RecA
Length = 365
Score = 61.6 bits (148), Expect = 1e-08
Identities = 26/66 (39%), Positives = 40/66 (60%)
Frame = -3
Query: 741 KKGSWYSYGDQRLGQGRDKAIQYLNENPHLLHEVEKIVRSSLIDGTNQTSLGYMKFSPTL 562
+KG+WYSY ++ +GQGRD+ I Y+ ENP E++K VR++L G ++ +K
Sbjct: 289 RKGAWYSYNNENIGQGRDRTITYMQENPAFTEEIDKRVRAALAGGAVVSATSVVKLDDNP 348
Query: 561 HQDDDD 544
DD D
Sbjct: 349 DTDDHD 354
>sp|P33542|RECA_AQUPY RecA protein (Recombinase A) gi|1086167|pir||A55020 recombination
protein recA - Aquifex pyrophilus
gi|349397|gb|AAA67702.1| DNA repair protein
Length = 348
Score = 59.7 bits (143), Expect = 4e-08
Identities = 28/54 (51%), Positives = 40/54 (73%), Gaps = 2/54 (3%)
Frame = -3
Query: 741 KKGSWYSYGDQRLGQGRDKAIQYLNENPHLLHEVEKIVR--SSLIDGTNQTSLG 586
K GSWYSYG++RLGQGR++A +YL E+P +L E+E+ VR S L+ + S+G
Sbjct: 291 KSGSWYSYGEKRLGQGREQAKKYLLEHPEMLEEIERKVREVSGLVRPDTENSVG 344
>gb|ZP_00040629.1| hypothetical protein [Xylella fastidiosa Ann-1]
Length = 347
Score = 57.8 bits (138), Expect = 2e-07
Identities = 31/74 (41%), Positives = 41/74 (54%), Gaps = 3/74 (4%)
Frame = -3
Query: 741 KKGSWYSYGDQRLGQGRDKAIQYLNENPHLLHEVEKIVRSSLIDGTNQTSLGYMKFSPT- 565
K G+WYSYG +R+GQG+D A YL ENPHL ++E +R KF PT
Sbjct: 287 KAGAWYSYGGERIGQGKDNARGYLRENPHLAAKLEADLRE--------------KFEPTE 332
Query: 564 --LHQDDDDTFEEA 529
+ D+DT E+A
Sbjct: 333 LSREEGDEDTLEDA 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 637,664,592
Number of Sequences: 1393205
Number of extensions: 13748608
Number of successful extensions: 29215
Number of sequences better than 10.0: 307
Number of HSP's better than 10.0 without gapping: 28110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29204
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
