>KMC009970A_C01 KMC009970A_c01
atTGCTAACTTACTTCTTCACAAAATCAAATGAGAGTAAGTTAGCATTCCATATATATAT
ATAAAGTGAGTTATCCACTGCGTCACACACCTTGTAGTTTTCTCATAGCTCCTCTAATGA
AAATATTTTTTTTTTCTGCAAAGAATTTCAACACAAAATGCATTCTACACAGCTCAAGTG
TAAAAATAGAAGATAATTTTTTTTTGAAACCGAGTGCCTAATAGTTGGGTGACTTATCTG
TAAAATATATTAAAAAAAAATAATTTTTCATCTATATAATGTTTATGTAATTTTATTTTT
TAAGTCACTTATAAGTAATTTATATTACATTGAAAAAATAATTAACAAGTTTTAAATGTA
AATTACAATTTTTTTATAAAAAAAAATAAAAAATTAATGCTTAAAAAATATTTATAGGGG
CGTCTAAATCACTTACTGTAAATATTAAACAAAAATCACTCTAATCTCAACTTACCTAAT
AATATCTTAACATTGACATAAAGATAAGTTAAAATTTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC009970A_C01 KMC009970A_c01
         (518 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_053421.1| probable 5 gene [Agrobacterium tumefaciens] gi|...    31  7.5
ref|NP_396526.1| AGR_pTi_bx83p [Agrobacterium tumefaciens] gi|50...    31  7.5
ref|NP_536127.1| gene 5 protein [Agrobacterium tumefaciens str. ...    31  7.5
gb|EAA15415.1| small GTP-binding protein domain, putative [Plasm...    31  9.8

>ref|NP_053421.1| probable 5 gene [Agrobacterium tumefaciens]
           gi|6498354|dbj|BAA87806.1| probable 5 gene
           [Agrobacterium tumefaciens]
          Length = 221

 Score = 31.2 bits (69), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (54%)
 Frame = -1

Query: 158 FCVEILCRKKKYFH*RSYEKTTRCVTQWI 72
           FCVEI+   K  FH    +K  RC  QW+
Sbjct: 189 FCVEIIAVGKALFHDNGLKKNPRCGGQWL 217

>ref|NP_396526.1| AGR_pTi_bx83p [Agrobacterium tumefaciens]
           gi|5042193|emb|CAB44638.1| hypothetical protein
           [Agrobacterium tumefaciens] gi|15163471|gb|AAK90967.1|
           AGR_pTi_bx83p [Agrobacterium tumefaciens str. C58
           (Cereon)]
          Length = 221

 Score = 31.2 bits (69), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (54%)
 Frame = -1

Query: 158 FCVEILCRKKKYFH*RSYEKTTRCVTQWI 72
           FCVEI+   K  FH    +K  RC  QW+
Sbjct: 189 FCVEIIAVGKALFHDNGLKKNPRCGGQWL 217

>ref|NP_536127.1| gene 5 protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
           gi|25302602|pir||AG3228 gene 5 protein [imported] -
           Agrobacterium tumefaciens  (strain C58, Dupont) plasmid
           Ti gi|17744023|gb|AAL46245.1| gene 5 protein
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 173

 Score = 31.2 bits (69), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (54%)
 Frame = -1

Query: 158 FCVEILCRKKKYFH*RSYEKTTRCVTQWI 72
           FCVEI+   K  FH    +K  RC  QW+
Sbjct: 141 FCVEIIAVGKALFHDNGLKKNPRCGGQWL 169

>gb|EAA15415.1| small GTP-binding protein domain, putative [Plasmodium yoelii yoelii]
          Length = 788

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
 Frame = -2

Query: 460  SDFCLIFTVSDLDAPINIF*ALIFYFFL*KNCNLHLKLVNYFF----NVI*ITYK*LKK* 293
            SD  ++F  ++ D+ +N    LI Y     N  +    +N F      +  I +   +K 
Sbjct: 661  SDIPVLFLNNNNDSHVNSLLKLITYINKRNNITISTSTLNLFLIQFTKLFPIPWLKKQKC 720

Query: 292  NY--INII*MKNYFFLIYFT--DKSPNY*ALGFKKKLSSIFTLELCRMHFVLKFFAEKKN 125
            N+  I  I      FLI+       PN     FKKKL   F L+   + FV K   + +N
Sbjct: 721  NFKFIKQIRQNPITFLIFTNLYKNIPNNYLTFFKKKLKDQFDLKYVNIQFVFKTTCDNRN 780

Query: 124  I 122
            I
Sbjct: 781  I 781

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,282,616
Number of Sequences: 1393205
Number of extensions: 7118996
Number of successful extensions: 11531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11523
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR040h09_f BP079127 1 518 2 MF025b08_f BP029569 3 462

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