Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009965A_C01 KMC009965A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565672.1| expressed protein; protein id: At2g28380.1, sup... 59 4e-08
gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa (japon... 47 1e-04
emb|CAB85622.1| putative proline-rich cell wall protein [Vitis v... 45 9e-04
ref|XP_145486.1| similar to selenoprotein W [Rattus norvegicus] ... 43 0.003
gb|AAF28388.1|AF151217_1 proline-rich protein [Arabidopsis thali... 42 0.006
>ref|NP_565672.1| expressed protein; protein id: At2g28380.1, supported by cDNA:
gi_14334605, supported by cDNA: gi_17065633 [Arabidopsis
thaliana] gi|25407980|pir||B84684 hypothetical protein
At2g28380 [imported] - Arabidopsis thaliana
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis
thaliana] gi|14334606|gb|AAK59481.1| unknown protein
[Arabidopsis thaliana] gi|17065634|gb|AAL33811.1|
unknown protein [Arabidopsis thaliana]
Length = 434
Score = 59.3 bits (142), Expect = 4e-08
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Frame = -1
Query: 590 APPVTIRTAVPVFS----PPPATVSHHQ----------VMQASSIRVAPPVNIRQAVPVY 453
APPVTIRTAVPVFS PPP ++ Q + A +R+APPV IR AVPV+
Sbjct: 289 APPVTIRTAVPVFSAPPMPPPPCTNNTQLPSSVYVPSLMRTAPPVRIAPPVTIRTAVPVF 348
Query: 452 A-APPARIDEPAPIRKDKTDVKAESMKIEEPPTVNAPSQE 336
A APP RI + + + S++ +E V S E
Sbjct: 349 ASAPPVRIRTAVKPTVEAGETRISSVQEKESIPVLPDSLE 388
Score = 33.1 bits (74), Expect = 2.7
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 494 VAPPVNIRQAVPVYAAPPARIDEPAPIRKD---KTDVKAESMKIEEPPTVNAP 345
+APPV IR AVPV++APP P P + + V S+ PP AP
Sbjct: 288 MAPPVTIRTAVPVFSAPPM---PPPPCTNNTQLPSSVYVPSLMRTAPPVRIAP 337
>gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa (japonica cultivar-group)]
Length = 514
Score = 47.4 bits (111), Expect = 1e-04
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = -1
Query: 590 APPVTIRTAVPVFSPPPATVSHHQVMQ-------ASSIRVAPPVNIRQAVPVYAAPPARI 432
APPVT+RT++PVFS PP + Q IR+A PV IR A P++ P+ +
Sbjct: 289 APPVTVRTSIPVFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVRIRPAPPLFT--PSAV 346
Query: 431 DEPAPIRKDK-TDVKAESMKIEEPPTV 354
P P+ + DV+ + +K P +
Sbjct: 347 QGPKPMMPVQIKDVQHQQIKETRSPVM 373
Score = 35.0 bits (79), Expect = 0.71
Identities = 24/83 (28%), Positives = 38/83 (44%), Gaps = 6/83 (7%)
Frame = -1
Query: 572 RTAVPVFSPPPATVSHHQVMQASSIRVAPPVNIRQAVPVYAAPP-----ARIDEPAPIRK 408
R+ P P H M S+ APPV +R ++PV++APP AR + P+
Sbjct: 264 RSRFPAAEAAPYVPVGHFRMPCHSM--APPVTVRTSIPVFSAPPLPPPGARTQQLPPLMS 321
Query: 407 DKTDVK-AESMKIEEPPTVNAPS 342
++ A ++I P + PS
Sbjct: 322 HPPPIRMASPVRIRPAPPLFTPS 344
>emb|CAB85622.1| putative proline-rich cell wall protein [Vitis vinifera]
Length = 217
Score = 44.7 bits (104), Expect = 9e-04
Identities = 30/104 (28%), Positives = 42/104 (39%)
Frame = -1
Query: 587 PPVTIRTAVPVFSPPPATVSHHQVMQASSIRVAPPVNIRQAVPVYAAPPARIDEPAPIRK 408
PP + PV+ PPP V + + PP + PVY +PP +++P P K
Sbjct: 47 PPPEYKPPTPVYKPPPVEKPPTPVYRPPPVEKPPP-EYKPPTPVYKSPP--VEKPPPEYK 103
Query: 407 DKTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPPESETMQSL 276
T V PP V P E K T ++ PP +L
Sbjct: 104 PPTPVY-------RPPPVEKPPPEYKPPTPVKPPPPPKHKTPTL 140
Score = 36.2 bits (82), Expect = 0.32
Identities = 26/101 (25%), Positives = 36/101 (34%), Gaps = 5/101 (4%)
Frame = -1
Query: 587 PPVTIRTAVPVFSPPPATVSHHQVMQASSIRVAPPVNIRQAVPVYAAPPAR-----IDEP 423
PP + +PV+ PP PP + PVY PP + P
Sbjct: 28 PPYEHKPPLPVYKSPPLG--------------KPPPEYKPPTPVYKPPPVEKPPTPVYRP 73
Query: 422 APIRKDKTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPP 300
P+ K + K + + PP V P E K T + PP
Sbjct: 74 PPVEKPPPEYKPPTPVYKSPP-VEKPPPEYKPPTPVYRPPP 113
>ref|XP_145486.1| similar to selenoprotein W [Rattus norvegicus] [Mus musculus]
Length = 353
Score = 43.1 bits (100), Expect = 0.003
Identities = 32/103 (31%), Positives = 48/103 (46%)
Frame = -1
Query: 584 PVTIRTAVPVFSPPPATVSHHQVMQASSIRVAPPVNIRQAVPVYAAPPARIDEPAPIRKD 405
P IRTA PV +P PA H+ +SIRV P + VP+ AA A + +P +
Sbjct: 22 PAPIRTATPVRAPNPA---HNSTPVRTSIRVRAPAQVPNPVPIRAA-SALLKDPTLAQNQ 77
Query: 404 KTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPPESETMQSL 276
K + + + I+ P V PS + +IP + + SL
Sbjct: 78 KPSIHSLAEAIQGPLPVLTPS----SSKTQGSIPDTASPIDSL 116
>gb|AAF28388.1|AF151217_1 proline-rich protein [Arabidopsis thaliana]
gi|21592385|gb|AAM64336.1| extensin-like protein
[Arabidopsis thaliana]
Length = 448
Score = 42.0 bits (97), Expect = 0.006
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -1
Query: 590 APPVTIRTAVPVFSPPPATVSHHQVMQASSIRVAPP-VNIRQAVPVYAAPPARIDEPAPI 414
+PPV + VPV+ PPP ++ + PP + VPVY PP +++ P PI
Sbjct: 187 SPPVEVPPPVPVYEPPP----KKEIPPPVPVYDPPPKKEVPPPVPVY-KPPPKVELPPPI 241
Query: 413 RKDKTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPP 300
K K KIE PP P K K+++ PP
Sbjct: 242 PKKPCPPKPP--KIEHPP----PVPVFKPPPKIEHPPP 273
Score = 37.0 bits (84), Expect = 0.19
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Frame = -1
Query: 587 PPVTIRTAVPVFSPPPATVSHHQVMQASSIRVA--PPVNIRQAVPVYAAPPARIDEP-AP 417
PPV + P PP H + + PPV + + PP ++D P P
Sbjct: 272 PPVPVYKPPPKIEHPPPVPVHKPPKKPCPPKKVDPPPVPVHKPPTKKPCPPKKVDPPPVP 331
Query: 416 IRKDKTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPP 300
+ K + KIE PP V K + IPP
Sbjct: 332 VHKPPPKIVIPPPKIEHPPPVPVYKPPPKIEHPPIYIPP 370
Score = 34.7 bits (78), Expect = 0.93
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 488 PPVNIRQAVPVYAAPPARIDEPAPIRKDKTDVKAESMKIEEPPTVNAP 345
PPV + + P PP +I+ P P+ K K E I PP V P
Sbjct: 328 PPVPVHKPPPKIVIPPPKIEHPPPVPVYKPPPKIEHPPIYIPPIVKKP 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,004,524
Number of Sequences: 1393205
Number of extensions: 10133622
Number of successful extensions: 46115
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 38974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44061
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
