Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009949A_C01 KMC009949A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199280.1| putative protein; protein id: At5g44670.1, supp... 129 2e-29
gb|AAL24253.1| AT4g20170/F1C12_90 [Arabidopsis thaliana] gi|2330... 120 1e-26
ref|NP_193750.1| putative protein; protein id: At4g20170.1, supp... 120 1e-26
ref|NP_565768.1| expressed protein; protein id: At2g33570.1, sup... 86 4e-16
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 47 2e-04
>ref|NP_199280.1| putative protein; protein id: At5g44670.1, supported by cDNA:
gi_13605502 [Arabidopsis thaliana]
gi|8953765|dbj|BAA98120.1|
gene_id:K15C23.12~pir||T05325~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|13605503|gb|AAK32745.1|AF361577_1 AT5g44670/K15C23_12
[Arabidopsis thaliana] gi|25090160|gb|AAN72243.1|
At5g44670/K15C23_12 [Arabidopsis thaliana]
Length = 519
Score = 129 bits (324), Expect = 2e-29
Identities = 57/89 (64%), Positives = 73/89 (81%)
Frame = -3
Query: 527 PRSLYATGVHMSQNLEGKTTHKTEGKIKYFHYHGTIAARRESCKMLINSTEITYDKNPYV 348
PR+++ATGVHMSQ+L+GKT H+ EGKI+YFHYHG+I+ RRE C+ L N T I ++ NPYV
Sbjct: 431 PRNVFATGVHMSQHLQGKTYHRAEGKIRYFHYHGSISQRREPCRHLYNGTRIVHENNPYV 490
Query: 347 LDTTMRDIAGVIKKFELKMIGDRLQKTRQ 261
LDTTMRDI +K FE++ IGDRL +TRQ
Sbjct: 491 LDTTMRDIGLAVKTFEIRTIGDRLLRTRQ 519
>gb|AAL24253.1| AT4g20170/F1C12_90 [Arabidopsis thaliana]
gi|23308339|gb|AAN18139.1| At4g20170/F1C12_90
[Arabidopsis thaliana]
Length = 388
Score = 120 bits (300), Expect = 1e-26
Identities = 51/89 (57%), Positives = 69/89 (77%)
Frame = -3
Query: 527 PRSLYATGVHMSQNLEGKTTHKTEGKIKYFHYHGTIAARRESCKMLINSTEITYDKNPYV 348
P +++ATGVHMSQNL+GKT HK E KI+YFHYHG+I+ RRE C+ L N + + ++ PYV
Sbjct: 300 PENVFATGVHMSQNLQGKTYHKAESKIRYFHYHGSISQRREPCRQLFNDSRVVFENTPYV 359
Query: 347 LDTTMRDIAGVIKKFELKMIGDRLQKTRQ 261
LDTT+ D+ ++ FEL+ IGDRL +TRQ
Sbjct: 360 LDTTICDVGLAVRTFELRTIGDRLLRTRQ 388
>ref|NP_193750.1| putative protein; protein id: At4g20170.1, supported by cDNA:
gi_16604494 [Arabidopsis thaliana]
gi|7452443|pir||T05325 hypothetical protein F1C12.90 -
Arabidopsis thaliana gi|2982434|emb|CAA18242.1| putative
protein [Arabidopsis thaliana]
gi|7268812|emb|CAB79017.1| putative protein [Arabidopsis
thaliana]
Length = 504
Score = 120 bits (300), Expect = 1e-26
Identities = 51/89 (57%), Positives = 69/89 (77%)
Frame = -3
Query: 527 PRSLYATGVHMSQNLEGKTTHKTEGKIKYFHYHGTIAARRESCKMLINSTEITYDKNPYV 348
P +++ATGVHMSQNL+GKT HK E KI+YFHYHG+I+ RRE C+ L N + + ++ PYV
Sbjct: 416 PENVFATGVHMSQNLQGKTYHKAESKIRYFHYHGSISQRREPCRQLFNDSRVVFENTPYV 475
Query: 347 LDTTMRDIAGVIKKFELKMIGDRLQKTRQ 261
LDTT+ D+ ++ FEL+ IGDRL +TRQ
Sbjct: 476 LDTTICDVGLAVRTFELRTIGDRLLRTRQ 504
>ref|NP_565768.1| expressed protein; protein id: At2g33570.1, supported by cDNA:
119054. [Arabidopsis thaliana]
gi|20196847|gb|AAB80674.2| expressed protein
[Arabidopsis thaliana] gi|21537058|gb|AAM61399.1|
unknown [Arabidopsis thaliana]
gi|22655220|gb|AAM98200.1| expressed protein
[Arabidopsis thaliana]
Length = 496
Score = 85.5 bits (210), Expect = 4e-16
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Frame = -3
Query: 524 RSLYATGVHMSQNLEGKTTHKTEGKIKYFHYHGTIAARRESCK-MLINSTE---ITYDKN 357
++ +ATGVHMS+N+ GKT HKTE KI+Y+HYH TI E C+ ML NS + Y+K
Sbjct: 406 KNAFATGVHMSENIVGKTLHKTETKIRYYHYHNTITVHEELCREMLPNSAKKKVTLYNKL 465
Query: 356 PYVLDTTMRDIAGVIKKFELKMIG 285
PYV D M+ + IK+FE K +G
Sbjct: 466 PYVYDDNMKKLVKTIKEFEQKKLG 489
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/64 (35%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
Frame = -3
Query: 209 LLVE*EFI*WLFFFCLKYFFISYIYRWVYDMMICFFFVCFFCVSCYFILF-------YCY 51
+LV FI F C+ + F + IY + +CF F CF C F+LF YC+
Sbjct: 401 MLVSFHFILEFLFVCIFFIFFTVIYNYFLLFFLCFVFKCFCLADCLFLLFDFECCLIYCF 460
Query: 50 LYLY 39
L LY
Sbjct: 461 LGLY 464
Score = 34.7 bits (78), Expect = 0.71
Identities = 20/63 (31%), Positives = 26/63 (40%), Gaps = 18/63 (28%)
Frame = -3
Query: 173 FFCLKYFFISYIYRWVYDMMI------CFFFVCFFCVSCY------------FILFYCYL 48
FFC+ Y Y YD + CF F+ F+C Y FILFY +
Sbjct: 46 FFCISVCLYGYCY---YDFCLILMLDLCFIFMSFYCNGFYLFILFLIDLVFCFILFYAFY 102
Query: 47 YLY 39
Y+Y
Sbjct: 103 YMY 105
Score = 33.5 bits (75), Expect = 1.6
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 16/63 (25%)
Frame = -3
Query: 182 WLFFFCLKYFFISYIYRWVYDM----------------MICFFFVCFFCVSCYFILFYCY 51
W FF LK+ F S+ + D+ MI F+FV F CV YF F +
Sbjct: 155 WYRFFALKFGFKSFFISKIGDVLLLLSFVMTFISTGYGMINFYFVNFLCVDFYFTAFMLF 214
Query: 50 LYL 42
L +
Sbjct: 215 LLI 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,043,455
Number of Sequences: 1393205
Number of extensions: 9460581
Number of successful extensions: 32422
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 28289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31648
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
