Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009935A_C01 KMC009935A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568926.1| protein disulfide isomerase precursor - like; p... 104 5e-22
gb|AAM65262.1| protein disulfide isomerase precursor-like [Arabi... 104 5e-22
gb|AAO26314.1| protein disulphide isomerase [Elaeis guineensis] 101 4e-21
ref|NP_191056.2| protein disulfide-isomerase-like protein; prote... 94 9e-19
pir||T06724 protein disulfide-isomerase homolog F28P10.60 - Arab... 94 9e-19
>ref|NP_568926.1| protein disulfide isomerase precursor - like; protein id:
At5g60640.1, supported by cDNA: 3797. [Arabidopsis
thaliana] gi|9759328|dbj|BAB09837.1| protein disulphide
isomerase-like protein [Arabidopsis thaliana]
gi|25082813|gb|AAN72005.1| protein disulfide isomerase
precursor - like [Arabidopsis thaliana]
Length = 597
Score = 104 bits (260), Expect = 5e-22
Identities = 53/89 (59%), Positives = 65/89 (72%), Gaps = 12/89 (13%)
Frame = -3
Query: 508 AKAEGFPTILFFPAGSKSSDPIAVDVDRTVVGFYKFLKKHASIPFQLQKPTSTSK----- 344
AKAEGFPTILFFPAG+K+S+PI VD DRTVV FYKFL+KHA+IPF+L+KP ST
Sbjct: 509 AKAEGFPTILFFPAGNKTSEPITVDTDRTVVAFYKFLRKHATIPFKLEKPASTESPKTAE 568
Query: 343 -------TESKSSDVKESQSSSTDTKDEL 278
TE+K S ++SS +D+KDEL
Sbjct: 569 STPKVETTETKESPDSTTKSSQSDSKDEL 597
>gb|AAM65262.1| protein disulfide isomerase precursor-like [Arabidopsis thaliana]
Length = 597
Score = 104 bits (260), Expect = 5e-22
Identities = 53/89 (59%), Positives = 65/89 (72%), Gaps = 12/89 (13%)
Frame = -3
Query: 508 AKAEGFPTILFFPAGSKSSDPIAVDVDRTVVGFYKFLKKHASIPFQLQKPTSTSK----- 344
AKAEGFPTILFFPAG+K+S+PI VD DRTVV FYKFL+KHA+IPF+L+KP ST
Sbjct: 509 AKAEGFPTILFFPAGNKTSEPITVDTDRTVVAFYKFLRKHATIPFKLEKPASTESPKTAE 568
Query: 343 -------TESKSSDVKESQSSSTDTKDEL 278
TE+K S ++SS +D+KDEL
Sbjct: 569 STPKVETTETKESPDSTTKSSQSDSKDEL 597
>gb|AAO26314.1| protein disulphide isomerase [Elaeis guineensis]
Length = 447
Score = 101 bits (252), Expect = 4e-21
Identities = 51/80 (63%), Positives = 64/80 (79%), Gaps = 3/80 (3%)
Frame = -3
Query: 508 AKAEGFPTILFFPAGSKSSDPIAVDVDRTVVGFYKFLKKHASIPFQLQKPTSTSKTESK- 332
AK +GFPT+LFFPAG+KS DP+ VD DRTVV FYKF+KKHA+IPF+LQ+P S +KT+S
Sbjct: 369 AKVDGFPTLLFFPAGNKSFDPVTVDTDRTVVAFYKFIKKHAAIPFKLQRPASAAKTDSAT 428
Query: 331 --SSDVKESQSSSTDTKDEL 278
S+ V E +S+ST KDEL
Sbjct: 429 DGSAPVGE-KSASTGVKDEL 447
>ref|NP_191056.2| protein disulfide-isomerase-like protein; protein id: At3g54960.1,
supported by cDNA: gi_20260431 [Arabidopsis thaliana]
gi|18072841|emb|CAC81067.1| ERp72 [Arabidopsis thaliana]
gi|20260432|gb|AAM13114.1| protein
disulfide-isomerase-like protein [Arabidopsis thaliana]
gi|23197928|gb|AAN15491.1| protein
disulfide-isomerase-like protein [Arabidopsis thaliana]
Length = 579
Score = 94.0 bits (232), Expect = 9e-19
Identities = 52/79 (65%), Positives = 58/79 (72%), Gaps = 2/79 (2%)
Frame = -3
Query: 508 AKAEGFPTILFFPAGSKSSDPIAVDVDRTVVGFYKFLKKHASIPFQLQKPTSTSKTES-- 335
AKA+GFPTILFFP G+KS DPIAVDVDRTVV YKFLKKHASIPF+L+KP + S
Sbjct: 505 AKADGFPTILFFPGGNKSFDPIAVDVDRTVVELYKFLKKHASIPFKLEKPATPEPVISTM 564
Query: 334 KSSDVKESQSSSTDTKDEL 278
KS + E SS KDEL
Sbjct: 565 KSDEKIEGDSS----KDEL 579
>pir||T06724 protein disulfide-isomerase homolog F28P10.60 - Arabidopsis
thaliana gi|4678297|emb|CAB41088.1| protein
disulfide-isomerase-like protein [Arabidopsis thaliana]
Length = 566
Score = 94.0 bits (232), Expect = 9e-19
Identities = 52/79 (65%), Positives = 58/79 (72%), Gaps = 2/79 (2%)
Frame = -3
Query: 508 AKAEGFPTILFFPAGSKSSDPIAVDVDRTVVGFYKFLKKHASIPFQLQKPTSTSKTES-- 335
AKA+GFPTILFFP G+KS DPIAVDVDRTVV YKFLKKHASIPF+L+KP + S
Sbjct: 492 AKADGFPTILFFPGGNKSFDPIAVDVDRTVVELYKFLKKHASIPFKLEKPATPEPVISTM 551
Query: 334 KSSDVKESQSSSTDTKDEL 278
KS + E SS KDEL
Sbjct: 552 KSDEKIEGDSS----KDEL 566
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,967,437
Number of Sequences: 1393205
Number of extensions: 8341805
Number of successful extensions: 20412
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 19543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20369
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
