>KMC009933A_C01 KMC009933A_c01
caataatctaaaggtagttcaaaaaaaatctaaagaaggtataaccaaccatacaaaatt
cacaattacagtaacatttaAGAGGGCCTAAAAGCTACTTTCATTAGCAAAGAAACATCT
TCAATGCCAATTTAAACAACATATTTAAGTAAAATCCCTAGAAAGATACTTCTCAAATAA
CATTCTCTTCTTTAAAGAAATGTTATAGAGAAAATACAACATTTTAGCATATACAATAGG
AGCACAAAAACAAATGAAATCTAAATTAACTTTTGGAGTCCTCATAACTTTGGTAGCCTA
ACAACACTCAATGGTGTAATTACATTATGATTCTCTACCTACCGTCTTAACCATCACCTT
TGATCCCAAATCTTTGGTATGTCTTCCAAAGCACCAATTTTTGAAGACTTCCTCTTGGCT
AGCTCAGTTTTAGTATGCTTCTCAAAAGCACCAATTCTGGAAAACTGGATCCTAGCTCAC
TCAAGGGCTAGCTCATCAGGGCGGCTAAAGAATGGCATTCCTAAATCAAGTGACTGGGCC
TTGGAATAACCTCAAGGGGCAGGGCCATGCCTGGACAATTTTTCCAAAATCCTTCTACCT
CCACATATACCATTCTAGCCATCATTTTTTAACCAAA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC009933A_C01 KMC009933A_c01
         (637 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566359.1| expressed protein; protein id: At3g09850.1, sup...    35  0.64
pir||H88533 probable ATP-dependent RNA helicase C06E1.10 - Caeno...    32  7.0
ref|NP_498895.1| Helicase conserved C-terminal domain containing...    32  7.0

>ref|NP_566359.1| expressed protein; protein id: At3g09850.1, supported by cDNA:
           gi_15982780 [Arabidopsis thaliana]
           gi|6681334|gb|AAF23251.1|AC015985_9 hypothetical protein
           [Arabidopsis thaliana] gi|15982781|gb|AAL09738.1|
           AT3g09850/F8A24_10 [Arabidopsis thaliana]
           gi|23308485|gb|AAN18212.1| At3g09850/F8A24_10
           [Arabidopsis thaliana]
          Length = 781

 Score = 35.4 bits (80), Expect = 0.64
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -1

Query: 637 FG*KMMARMVYVEVEGFWKNCPGMALPLEVIPRPSHL 527
           FG KMMA+M +++  G  K+  G+A P+E + RP  L
Sbjct: 638 FGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRPKSL 674

 Score = 31.6 bits (70), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 637 FG*KMMARMVYVEVEGFWKNCPGMALPLEVIPRP 536
           FG +MMARM +VE  G  +   G+  PL  + RP
Sbjct: 739 FGSRMMARMGFVEGSGLGRESQGIVNPLVAVRRP 772

>pir||H88533 probable ATP-dependent RNA helicase C06E1.10 - Caenorhabditis
           elegans
          Length = 1152

 Score = 32.0 bits (71), Expect = 7.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 524 LGMPFFSRPDELALE*ARIQFSRIGAFEKHTKTELAKRKSSKIG 393
           +  PF S PDE  LE A  +  R+GA  + TK    + + +K+G
Sbjct: 708 VNFPFPSAPDEQMLESAEKRLCRLGALSESTKNGKTEARITKLG 751

>ref|NP_498895.1| Helicase conserved C-terminal domain containing protein
           [Caenorhabditis elegans]
           gi|21431859|sp|P34305|YKQ0_CAEEL Putative ATP-dependent
           RNA helicase C06E1.10 in chromosome III
           gi|16041605|gb|AAA27928.2| Hypothetical protein C06E1.10
           [Caenorhabditis elegans]
          Length = 1148

 Score = 32.0 bits (71), Expect = 7.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 524 LGMPFFSRPDELALE*ARIQFSRIGAFEKHTKTELAKRKSSKIG 393
           +  PF S PDE  LE A  +  R+GA  + TK    + + +K+G
Sbjct: 708 VNFPFPSAPDEQMLESAEKRLCRLGALSESTKNGKTEARITKLG 751

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,686,315
Number of Sequences: 1393205
Number of extensions: 10088166
Number of successful extensions: 18068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18067
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR037b06_f BP078838 1 473 2 SPDL089c05_f BP057576 184 637

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