Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009919A_C01 KMC009919A_c01
(397 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC54028.1| envelope glycoprotein [Human immunodeficiency vir... 30 7.3
gb|AAA80620.1| envelope glycoprotein 30 9.5
>gb|AAC54028.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 494
Score = 30.0 bits (66), Expect = 7.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 223 ESLQSIYIVSPLVKYLQLVNSWNSINQIKMRSTR*LMDLSTTIQRICSINQNTRVHMK 396
+SL+ ++PL L N WNS + +T D STT R CS N T + K
Sbjct: 85 QSLKPCVKLTPLCVTLNCTNEWNS--TVGNNNTLVNRDSSTTGMRKCSFNVTTAIRDK 140
>gb|AAA80620.1| envelope glycoprotein
Length = 489
Score = 29.6 bits (65), Expect = 9.5
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = +1
Query: 223 ESLQSIYIVSPLVKYLQLVNSWNS-INQIKMRSTR*LMDLSTTIQRICSINQNTRVHMK 396
+SL+ ++PL L N WNS + I +R++ STT R CS N T + K
Sbjct: 85 QSLKPCVKLTPLCVTLNCTNEWNSTVGNIILRNS------STTGMRKCSFNVTTAIRDK 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,468,061
Number of Sequences: 1393205
Number of extensions: 5206730
Number of successful extensions: 8663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8662
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
