Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009901A_C01 KMC009901A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL69513.1| putative SHORT-ROOT (SHR) protein [Arabidopsis th... 96 3e-19
ref|NP_195480.1| SHORT-ROOT (SHR); protein id: At4g37650.1 [Arab... 96 3e-19
dbj|BAC20900.1| short-root protein-like [Oryza sativa (japonica ... 94 1e-18
dbj|BAC57752.1| putative short-root protein [Oryza sativa (japon... 63 2e-09
ref|NP_190564.1| putative protein; protein id: At3g49950.1 [Arab... 50 2e-05
>gb|AAL69513.1| putative SHORT-ROOT (SHR) protein [Arabidopsis thaliana]
Length = 478
Score = 95.9 bits (237), Expect = 3e-19
Identities = 45/68 (66%), Positives = 51/68 (74%), Gaps = 2/68 (2%)
Frame = -2
Query: 577 ETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEG-WSMTQCSD-GGILLTWKEQAV 404
ETA KW+RRM +G +S+EV DDVRALLRRYKEG WSM QC D GI L W++Q V
Sbjct: 410 ETARKWSRRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPV 469
Query: 403 VWASAWRP 380
VWASAWRP
Sbjct: 470 VWASAWRP 477
>ref|NP_195480.1| SHORT-ROOT (SHR); protein id: At4g37650.1 [Arabidopsis thaliana]
gi|7485768|pir||T04722 hypothetical protein F19F18.140 -
Arabidopsis thaliana gi|4468990|emb|CAB38304.1| putative
protein [Arabidopsis thaliana]
gi|7270747|emb|CAB80430.1| putative protein [Arabidopsis
thaliana] gi|8453100|gb|AAF75234.1|AF233752_1 short-root
protein [Arabidopsis thaliana]
Length = 531
Score = 95.9 bits (237), Expect = 3e-19
Identities = 45/68 (66%), Positives = 51/68 (74%), Gaps = 2/68 (2%)
Frame = -2
Query: 577 ETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEG-WSMTQCSD-GGILLTWKEQAV 404
ETA KW+RRM +G +S+EV DDVRALLRRYKEG WSM QC D GI L W++Q V
Sbjct: 463 ETARKWSRRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPV 522
Query: 403 VWASAWRP 380
VWASAWRP
Sbjct: 523 VWASAWRP 530
>dbj|BAC20900.1| short-root protein-like [Oryza sativa (japonica cultivar-group)]
Length = 629
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/72 (59%), Positives = 51/72 (70%), Gaps = 6/72 (8%)
Frame = -2
Query: 577 ETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEGWSMTQ------CSDGGILLTWK 416
ETAA W RRM AG + AFSE+V DDVR+LLRRY+EGWSM + + G+ L WK
Sbjct: 558 ETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREAGTDDSAAGAGVFLAWK 617
Query: 415 EQAVVWASAWRP 380
EQ +VWASAWRP
Sbjct: 618 EQPLVWASAWRP 629
>dbj|BAC57752.1| putative short-root protein [Oryza sativa (japonica
cultivar-group)]
Length = 472
Score = 63.2 bits (152), Expect = 2e-09
Identities = 29/67 (43%), Positives = 40/67 (59%)
Frame = -2
Query: 580 EETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEGWSMTQCSDGGILLTWKEQAVV 401
+E +W +RM AG AAF EE +V+A+L + GW M + D ++LTWK VV
Sbjct: 406 QEDRTRWGQRMRAAGFRAAAFGEEAAGEVKAMLNDHAAGWGMKR-EDDDLVLTWKGHNVV 464
Query: 400 WASAWRP 380
+ASAW P
Sbjct: 465 FASAWAP 471
>ref|NP_190564.1| putative protein; protein id: At3g49950.1 [Arabidopsis thaliana]
gi|11357756|pir||T45848 hypothetical protein F3A4.30 -
Arabidopsis thaliana gi|6522916|emb|CAB62103.1| putative
protein [Arabidopsis thaliana]
Length = 410
Score = 50.4 bits (119), Expect = 2e-05
Identities = 24/67 (35%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Frame = -2
Query: 577 ETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEGWSM-TQCSDGGILLTWKEQAVV 401
ET +W RM A E+ DV+A+L + GW M + D ++LTWK +VV
Sbjct: 343 ETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVV 402
Query: 400 WASAWRP 380
+A+ W P
Sbjct: 403 FATVWVP 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,339,744
Number of Sequences: 1393205
Number of extensions: 14239449
Number of successful extensions: 66886
Number of sequences better than 10.0: 427
Number of HSP's better than 10.0 without gapping: 55454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64883
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
