Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009884A_C01 KMC009884A_c01
(732 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683304.1| unknown protein; protein id: At1g13360.1 [Arabi... 132 7e-30
ref|NP_566782.1| expressed protein; protein id: At3g25870.1, sup... 89 8e-17
dbj|BAA99375.1| unnamed protein product [Oryza sativa (japonica ... 84 3e-15
dbj|BAC42768.1| unknown protein [Arabidopsis thaliana] 59 9e-08
pir||T09283 late embryonic abundant protein EMB3 - white spruce ... 51 2e-05
>ref|NP_683304.1| unknown protein; protein id: At1g13360.1 [Arabidopsis thaliana]
gi|9958057|gb|AAG09546.1|AC011810_5 Unknown Protein
[Arabidopsis thaliana] gi|27754364|gb|AAO22631.1|
unknown protein [Arabidopsis thaliana]
gi|28393909|gb|AAO42362.1| unknown protein [Arabidopsis
thaliana]
Length = 194
Score = 132 bits (331), Expect = 7e-30
Identities = 82/183 (44%), Positives = 112/183 (60%), Gaps = 11/183 (6%)
Frame = -3
Query: 721 KKRVRADS-DELDLESSEAKRLREYLLEFFDDTDPTTPSTQDLDSVIRSLQEEISASSSP 545
KKRVR +S DE L+S E KRLR+ L + DD+DP P +QDLDSV++S ++E+S ++
Sbjct: 16 KKRVRDESFDEAVLDSPEVKRLRDDLFDVLDDSDPE-PVSQDLDSVMKSFEDELSTVTTT 74
Query: 544 APLRVTTSDSGQ--IGYLLGASDDELGLPPTEDLSSVVVQEAE--------MFRVPPESA 395
+T+ Q +GYLL ASDDELGLPP +S V V + E + R +S
Sbjct: 75 TAQGSSTAGETQPDLGYLLEASDDELGLPPPPSISPVPVAKEEVTTETVTDLVRASSDS- 133
Query: 394 SGIGELWGFEDQMPSYDSFGLGNGFGYESNTDYVAFDGLFDHSDVYYDSNEFSDSWRQET 215
SGI E+WGFED + +Y G+G G DYVA +GLF+ SD +DS + SWR E+
Sbjct: 134 SGIDEIWGFEDHVSNYGGLDFGSGVG--DGGDYVAVEGLFEFSDDCFDSGDLF-SWRSES 190
Query: 214 MPA 206
+PA
Sbjct: 191 LPA 193
>ref|NP_566782.1| expressed protein; protein id: At3g25870.1, supported by cDNA:
141813. [Arabidopsis thaliana]
gi|9279590|dbj|BAB01048.1| gene_id:MPE11.2~unknown
protein [Arabidopsis thaliana]
Length = 170
Score = 88.6 bits (218), Expect = 8e-17
Identities = 69/177 (38%), Positives = 95/177 (52%), Gaps = 6/177 (3%)
Frame = -3
Query: 718 KRVRADSDELDLESSEAKRLREYLLEFFDDTDPTTPSTQDLDSVIRSLQEEISASSSPAP 539
KRVR D LDL+S + KRLR+ + FDD+ P +QDLDSV++S + E+S +++
Sbjct: 18 KRVR---DGLDLDSPDVKRLRD---DLFDDSG-LDPVSQDLDSVMKSFENELSTTTAALS 70
Query: 538 LRVTTSDSGQIGYLLGASDDELGLP----PTEDLSSVVVQE--AEMFRVPPESASGIGEL 377
T D +GYL ASDDELGLP P + L +E E+ R +S S +GEL
Sbjct: 71 SGETQPD---LGYLFEASDDELGLPPPLTPPQTLLPPSCEETVTELVRASSDS-SEVGEL 126
Query: 376 WGFEDQMPSYDSFGLGNGFGYESNTDYVAFDGLFDHSDVYYDSNEFSDSWRQETMPA 206
GFED + + LG+ DGLF++ D DS + SWR E +PA
Sbjct: 127 CGFEDHVTEFGPCDLGD-------------DGLFEYFDGCLDSGDLF-SWRPEFLPA 169
>dbj|BAA99375.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 175
Score = 83.6 bits (205), Expect = 3e-15
Identities = 70/178 (39%), Positives = 86/178 (47%), Gaps = 7/178 (3%)
Frame = -3
Query: 718 KRVRADSDELDLESSEAKRLR-EYLLEFFDDTDPTTPSTQDLDSVIRSLQEEISASSSPA 542
KR R DE D EAKRLR E LL+ DD + DL SV+RS +EEI A
Sbjct: 11 KRARDAEDEAD----EAKRLRAEDLLDMLDDDTDAGGAAGDLASVMRSFEEEIVAGDVAG 66
Query: 541 PLRVTTSDSGQIGYLLGASDDELGLPPTEDLSSVVVQEAEMFRVPPESASGI-GELWGFE 365
+ TT ++G+LL ASDDELGLPP SS E E PE A G G++WGFE
Sbjct: 67 DVAPTTQP--ELGFLLEASDDELGLPPATASSS----EEEAGAGEPEDAIGFGGQIWGFE 120
Query: 364 DQMPSYDSFGLGNGFGYESNTDYVAFDGLFDHSDVYYDSNEFS-----DSWRQETMPA 206
D++ G GF S A + D +D+ F + R ETMPA
Sbjct: 121 DEIGG----GGYAGFALTSPEAVAAAAAAAEWDDDGFDAGLFGFGDEVSALRHETMPA 174
>dbj|BAC42768.1| unknown protein [Arabidopsis thaliana]
Length = 116
Score = 58.5 bits (140), Expect = 9e-08
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Frame = -3
Query: 586 IRSLQEEISASSSPAPLRVTTSDSGQIGYLLGASDDELGLP----PTEDLSSVVVQE--A 425
++S + E+S +++ T D +GYL ASDDELGLP P + L +E
Sbjct: 1 MKSFENELSTTTAALSSGETQPD---LGYLFEASDDELGLPPPLTPPQTLLPPSCEETVT 57
Query: 424 EMFRVPPESASGIGELWGFEDQMPSYDSFGLGNGFGYESNTDYVAFDGLFDHSDVYYDSN 245
E+ R +S S +GEL GFED + + LG+ DGLF++ D DS
Sbjct: 58 ELVRASSDS-SEVGELCGFEDHVTEFGPCDLGD-------------DGLFEYFDGCLDSG 103
Query: 244 EFSDSWRQETMPA 206
+ SWR E +PA
Sbjct: 104 DLF-SWRPEFLPA 115
>pir||T09283 late embryonic abundant protein EMB3 - white spruce
gi|1350535|gb|AAC24488.1| late embryogenesis abundant
protein [Picea glauca]
Length = 152
Score = 50.8 bits (120), Expect = 2e-05
Identities = 34/89 (38%), Positives = 50/89 (55%), Gaps = 5/89 (5%)
Frame = -3
Query: 613 PSTQDLDSVIRSLQEEISASSSPAPLRVTT-SDSGQIGYLLGASDDELGLPPT----EDL 449
P+ + + V++SL+EEIS SS +R + S+ ++ YLL ASDDELG+PP+ ED
Sbjct: 62 PAEEVVCGVMKSLEEEISGSSRGEEIRSSDFSNMDEMSYLLRASDDELGIPPSPSVYEDA 121
Query: 448 SSVVVQEAEMFRVPPESASGIGELWGFED 362
S V + + E A + LW ED
Sbjct: 122 YSAVAESQVLGE--SEHACNLEGLWQLED 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 665,874,835
Number of Sequences: 1393205
Number of extensions: 17045072
Number of successful extensions: 165406
Number of sequences better than 10.0: 887
Number of HSP's better than 10.0 without gapping: 90748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142765
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
