Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009883A_C01 KMC009883A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197381.1| NADH:ubiquinone oxidoreductase - like protein; ... 174 5e-43
ref|NP_566280.1| expressed protein; protein id: At3g06310.1, sup... 169 3e-41
ref|NP_055037.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomp... 69 5e-11
ref|XP_216044.1| similar to RIKEN cDNA 0610033L03 [Mus musculus]... 67 2e-10
ref|NP_787020.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomp... 66 3e-10
>ref|NP_197381.1| NADH:ubiquinone oxidoreductase - like protein; protein id:
At5g18800.1, supported by cDNA: 10381. [Arabidopsis
thaliana] gi|21536569|gb|AAM60901.1| NADH:ubiquinone
oxidoreductase-like protein [Arabidopsis thaliana]
gi|28466879|gb|AAO44048.1| At5g18800 [Arabidopsis
thaliana]
Length = 106
Score = 174 bits (442), Expect = 5e-43
Identities = 80/94 (85%), Positives = 85/94 (90%)
Frame = -3
Query: 572 PTSAVLMASSKHIGIRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCT 393
PTSAVL AS+KHIG+RC EN+ FLKCKK D NPEKCLDKGRDVTRCVLGLLKDLHQKC
Sbjct: 13 PTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQ 72
Query: 392 KEMDDYVGCMYYHTNEFDLCRKEQEAFEKKCSLE 291
KEMDDYVGCMYY+TNEFDLCRKEQEAFEK C L+
Sbjct: 73 KEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106
>ref|NP_566280.1| expressed protein; protein id: At3g06310.1, supported by cDNA:
30584., supported by cDNA: gi_20260661 [Arabidopsis
thaliana] gi|6437555|gb|AAF08582.1|AC011623_15 unknown
protein [Arabidopsis thaliana]
gi|20260662|gb|AAM13229.1| unknown protein [Arabidopsis
thaliana] gi|21592632|gb|AAM64581.1| NADH:ubiquinone
oxidoreductase-like protein [Arabidopsis thaliana]
gi|22136294|gb|AAM91225.1| unknown protein [Arabidopsis
thaliana]
Length = 108
Score = 169 bits (427), Expect = 3e-41
Identities = 77/94 (81%), Positives = 84/94 (88%)
Frame = -3
Query: 572 PTSAVLMASSKHIGIRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCT 393
PTSAVL AS+KHIGIRC EN+ FLKCKK D NPEKCL+KGRDVTRCVLGLLKDLHQ+C
Sbjct: 15 PTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGLLKDLHQRCP 74
Query: 392 KEMDDYVGCMYYHTNEFDLCRKEQEAFEKKCSLE 291
KEMD YVGCMYY+TNEF+LCRKEQEAFEK C L+
Sbjct: 75 KEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108
>ref|NP_055037.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa; NADH
dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 (19kD,
PGIV) [Homo sapiens] gi|8039804|sp|P51970|NUPM_HUMAN
NADH-ubiquinone oxidoreductase 19 kDa subunit (Complex
I-19KD) (CI-19KD) (Complex I-PGIV) (CI-PGIV)
gi|5326825|gb|AAD42056.1|AF044953_1 NADH:ubiquinone
oxidoreductase PGIV subunit [Homo sapiens]
gi|12654385|gb|AAH01016.1|AAH01016 NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 8 (19kD, PGIV) [Homo
sapiens]
Length = 172
Score = 68.6 bits (166), Expect = 5e-11
Identities = 31/94 (32%), Positives = 57/94 (59%), Gaps = 1/94 (1%)
Frame = -3
Query: 569 TSAVLMASSKHIGIRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCTK 390
+SAVL A++ H G +C N EF+ C+ ++++P +CL++G+ V +C L + + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAE 80
Query: 389 EMDDYVGCMYYHTNE-FDLCRKEQEAFEKKCSLE 291
+Y C+ Y + F CRK+Q F+ +C L+
Sbjct: 81 PFTEYWTCIDYTGQQLFRHCRKQQAKFD-ECVLD 113
>ref|XP_216044.1| similar to RIKEN cDNA 0610033L03 [Mus musculus] [Rattus norvegicus]
Length = 172
Score = 67.0 bits (162), Expect = 2e-10
Identities = 31/94 (32%), Positives = 55/94 (57%), Gaps = 1/94 (1%)
Frame = -3
Query: 569 TSAVLMASSKHIGIRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCTK 390
+SAVL A++ H G +C N EF+ C+ ++++P +CL +G+ V C L + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAE 80
Query: 389 EMDDYVGCMYYHTNE-FDLCRKEQEAFEKKCSLE 291
+Y C+ Y + + F CRK+Q F+ +C L+
Sbjct: 81 PFTEYWTCLDYSSMQLFRHCRKQQAKFD-ECVLD 113
>ref|NP_787020.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa [Bos
taurus] gi|1171870|sp|P42029|NUPM_BOVIN NADH-ubiquinone
oxidoreductase 19 kDa subunit (Complex I-19KD) (CI-19KD)
(Complex I-PGIV) (CI-PGIV) gi|89670|pir||S16208 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) 19K chain -
bovine gi|599681|emb|CAA42218.1| 19 kDa subunit of
NADH:ubiquinone oxidoreductase complex (complex I) [Bos
taurus]
Length = 172
Score = 66.2 bits (160), Expect = 3e-10
Identities = 30/94 (31%), Positives = 57/94 (59%), Gaps = 1/94 (1%)
Frame = -3
Query: 569 TSAVLMASSKHIGIRCHSENLEFLKCKKKDQNPEKCLDKGRDVTRCVLGLLKDLHQKCTK 390
+S+VL A++ H G +C N EF+ C+ ++++P +CL++G+ V +C L + + + C +
Sbjct: 21 SSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCAE 80
Query: 389 EMDDYVGCMYYHTNE-FDLCRKEQEAFEKKCSLE 291
+Y C+ Y + F CRK+Q F+ +C L+
Sbjct: 81 PFTEYWTCIDYSGLQLFRRCRKQQAQFD-ECVLD 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,364,935
Number of Sequences: 1393205
Number of extensions: 10834809
Number of successful extensions: 28127
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28087
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
