Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009875A_C01 KMC009875A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567433.1| expressed protein; protein id: At4g14500.1, sup... 239 1e-62
pir||C71407 hypothetical protein - Arabidopsis thaliana gi|22448... 239 1e-62
ref|NP_566722.1| expressed protein; protein id: At3g23080.1, sup... 216 1e-55
gb|AAL07016.1| unknown protein [Arabidopsis thaliana] 214 8e-55
dbj|BAC24890.1| OJ1046_F10.28 [Oryza sativa (japonica cultivar-g... 181 6e-45
>ref|NP_567433.1| expressed protein; protein id: At4g14500.1, supported by cDNA:
gi_16226250 [Arabidopsis thaliana]
gi|16226251|gb|AAL16115.1|AF428283_1 AT4g14500/dl3290w
[Arabidopsis thaliana] gi|22531042|gb|AAM97025.1|
expressed protein [Arabidopsis thaliana]
Length = 433
Score = 239 bits (611), Expect = 1e-62
Identities = 113/183 (61%), Positives = 137/183 (74%), Gaps = 1/183 (0%)
Frame = +3
Query: 18 MEDSFFDVVEFLKKPSIAETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLVFLGFRSK 197
M++++FD++ F K PS ETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGL++LGFRSK
Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60
Query: 198 LRFLWTAPPGFGARRLWFAFTALSAFSICRTFWSNFKGKKNK-ADPSPSQSDDAADSNSG 374
LRFLWTAPPGFGARRLW AFTALSAFS+CRT WS + NK A S S D++
Sbjct: 61 LRFLWTAPPGFGARRLWLAFTALSAFSVCRTIWSRNDTRANKSATGSASSQTPVEDNDES 120
Query: 375 NASKQTTRSGDKAEERGKDIVTQADLENLLHLLESKGGVMDWQCFMERSTPNMQYQAWRH 554
+ + + +G E DIVT+ DLE+LL LLE ++WQ M+++TPNM YQAWRH
Sbjct: 121 GLASRGSDNGTVTE----DIVTENDLEHLLQLLEVGNAALEWQSMMDKTTPNMSYQAWRH 176
Query: 555 DPE 563
+PE
Sbjct: 177 EPE 179
>pir||C71407 hypothetical protein - Arabidopsis thaliana
gi|2244806|emb|CAB10229.1| hypothetical protein
[Arabidopsis thaliana] gi|7268156|emb|CAB78492.1|
hypothetical protein [Arabidopsis thaliana]
Length = 420
Score = 239 bits (611), Expect = 1e-62
Identities = 113/183 (61%), Positives = 137/183 (74%), Gaps = 1/183 (0%)
Frame = +3
Query: 18 MEDSFFDVVEFLKKPSIAETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLVFLGFRSK 197
M++++FD++ F K PS ETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGL++LGFRSK
Sbjct: 1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60
Query: 198 LRFLWTAPPGFGARRLWFAFTALSAFSICRTFWSNFKGKKNK-ADPSPSQSDDAADSNSG 374
LRFLWTAPPGFGARRLW AFTALSAFS+CRT WS + NK A S S D++
Sbjct: 61 LRFLWTAPPGFGARRLWLAFTALSAFSVCRTIWSRNDTRANKSATGSASSQTPVEDNDES 120
Query: 375 NASKQTTRSGDKAEERGKDIVTQADLENLLHLLESKGGVMDWQCFMERSTPNMQYQAWRH 554
+ + + +G E DIVT+ DLE+LL LLE ++WQ M+++TPNM YQAWRH
Sbjct: 121 GLASRGSDNGTVTE----DIVTENDLEHLLQLLEVGNAALEWQSMMDKTTPNMSYQAWRH 176
Query: 555 DPE 563
+PE
Sbjct: 177 EPE 179
>ref|NP_566722.1| expressed protein; protein id: At3g23080.1, supported by cDNA:
gi_15810256 [Arabidopsis thaliana]
gi|9294197|dbj|BAB02099.1| membrane related protein-like
[Arabidopsis thaliana] gi|23297764|gb|AAN13021.1|
unknown protein [Arabidopsis thaliana]
Length = 419
Score = 216 bits (551), Expect = 1e-55
Identities = 104/174 (59%), Positives = 125/174 (71%)
Frame = +3
Query: 42 VEFLKKPSIAETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLVFLGFRSKLRFLWTAP 221
++F KPS+ ETFVD+LLCAVPIW+ VMIGLLIGWSWRPRWT LV+LGFRSKLRFL T P
Sbjct: 5 MDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTVP 64
Query: 222 PGFGARRLWFAFTALSAFSICRTFWSNFKGKKNKADPSPSQSDDAADSNSGNASKQTTRS 401
PGFGARR+W AFTALSAFS+C T SN K N P + + +R+
Sbjct: 65 PGFGARRIWLAFTALSAFSVCST--SN-KSSVNNGSSKPVEEE------------AFSRA 109
Query: 402 GDKAEERGKDIVTQADLENLLHLLESKGGVMDWQCFMERSTPNMQYQAWRHDPE 563
DK E+ KD+VT+ DLE+LLHLLE+ +WQ M++STPNM YQAWRH+PE
Sbjct: 110 SDKVTEKEKDVVTEKDLEHLLHLLEAGNASFEWQSMMDKSTPNMSYQAWRHEPE 163
>gb|AAL07016.1| unknown protein [Arabidopsis thaliana]
Length = 419
Score = 214 bits (544), Expect = 8e-55
Identities = 103/174 (59%), Positives = 124/174 (71%)
Frame = +3
Query: 42 VEFLKKPSIAETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLVFLGFRSKLRFLWTAP 221
++F KPS+ ETFVD+LLCAVPIW+ VMIGLLIGWSWRPRWT LV+LGFRSKLRFL T P
Sbjct: 5 MDFFNKPSVTETFVDVLLCAVPIWVTVMIGLLIGWSWRPRWTSLVYLGFRSKLRFLCTVP 64
Query: 222 PGFGARRLWFAFTALSAFSICRTFWSNFKGKKNKADPSPSQSDDAADSNSGNASKQTTRS 401
PGFGARR+W AFTALSAFS+C T SN K N P + + +R+
Sbjct: 65 PGFGARRIWLAFTALSAFSVCST--SN-KSSVNNGSSKPVEEE------------AFSRA 109
Query: 402 GDKAEERGKDIVTQADLENLLHLLESKGGVMDWQCFMERSTPNMQYQAWRHDPE 563
DK + KD+VT+ DLE+LLHLLE+ +WQ M++STPNM YQAWRH+PE
Sbjct: 110 SDKVTGKEKDVVTEKDLEHLLHLLEAGNASFEWQSMMDKSTPNMSYQAWRHEPE 163
>dbj|BAC24890.1| OJ1046_F10.28 [Oryza sativa (japonica cultivar-group)]
Length = 442
Score = 181 bits (459), Expect = 6e-45
Identities = 96/180 (53%), Positives = 124/180 (68%), Gaps = 4/180 (2%)
Frame = +3
Query: 36 DVVEFLKKPSIAETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLVFLGFRSKLRFLWT 215
+ V L++P++AE VD+LLCAVPIW AVMIGL+IGW+WRPRWTGL++LGFRS+LR L+
Sbjct: 7 EAVGLLRRPAVAEMAVDVLLCAVPIWAAVMIGLVIGWAWRPRWTGLLYLGFRSRLRLLY- 65
Query: 216 APPGFGARRLWFAFTALSAFSICRTFWS---NFKGKKNKADPSPSQSDDAADSNSGNASK 386
PPG GARRLW A TALSAFS+ S +GK + D + + DDAAD+ SG+A
Sbjct: 66 VPPGLGARRLWLACTALSAFSVAPRLLSTAFGSRGKHQRKDAALADDDDAADA-SGDAGD 124
Query: 387 QTTRSGDKAEERGKDIVTQADLENLLHLLESK-GGVMDWQCFMERSTPNMQYQAWRHDPE 563
G E G +VT+ DLE+L+ LL++K G WQ MER+T NM Y+AWR +PE
Sbjct: 125 CV--DGRTFFEGGHHVVTEKDLEHLVQLLDNKESGDTTWQHLMERTTSNMTYKAWRREPE 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,890,492
Number of Sequences: 1393205
Number of extensions: 14361234
Number of successful extensions: 134600
Number of sequences better than 10.0: 1072
Number of HSP's better than 10.0 without gapping: 80381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124205
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
