Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009863A_C01 KMC009863A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00090777.1| hypothetical protein [Azotobacter vinelandii] 32 5.3
ref|NP_562731.1| DNA repair and genetic recombination protein [C... 32 9.1
>ref|ZP_00090777.1| hypothetical protein [Azotobacter vinelandii]
Length = 724
Score = 32.3 bits (72), Expect = 5.3
Identities = 19/53 (35%), Positives = 28/53 (51%)
Frame = -1
Query: 446 NAAEIFFMQATMLLRFGILMLYRS*S*NVAEIGIMADVRPTSKIMLRLDLFHA 288
+AA + F + G++ + S NVA+I +AD P K M+ L LFHA
Sbjct: 380 DAAVVLFTSGSEGKPKGVVHSHASLLANVAQIRAVADFTPQDKFMMALPLFHA 432
>ref|NP_562731.1| DNA repair and genetic recombination protein [Clostridium
perfringens] gi|18145478|dbj|BAB81521.1| DNA repair and
genetic recombination protein [Clostridium perfringens
str. 13]
Length = 565
Score = 31.6 bits (70), Expect = 9.1
Identities = 17/45 (37%), Positives = 28/45 (61%), Gaps = 1/45 (2%)
Frame = +1
Query: 379 RYNINIPNLNSIVACIKKISAAF*-L*LQHNNNDY*NQQNHLLFL 510
R NI + + IVA +KKIS+ + QHNN + N++ H+++L
Sbjct: 102 RSNIKVNGRSIIVATLKKISSTLLDIHGQHNNQNLLNKEKHIMYL 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,808,304
Number of Sequences: 1393205
Number of extensions: 10144038
Number of successful extensions: 21245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21194
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
