Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009861A_C01 KMC009861A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564547.1| expressed protein; protein id: At1g49480.1, sup... 65 4e-10
gb|AAK68808.1| Unknown protein [Arabidopsis thaliana] 65 4e-10
ref|NP_188529.1| unknown protein; protein id: At3g18990.1 [Arabi... 64 8e-10
dbj|BAB01695.1| gb|AAD43153.1~gene_id:K13E13.10~similar to unkno... 64 8e-10
gb|AAM76972.1|AF289051_1 reduced vernalization response 1 [Arabi... 64 8e-10
>ref|NP_564547.1| expressed protein; protein id: At1g49480.1, supported by cDNA:
gi_14596160 [Arabidopsis thaliana]
gi|25373244|pir||E96531 hypothetical protein F13F21.8
[imported] - Arabidopsis thaliana
gi|5430753|gb|AAD43153.1|AC007504_8 Unknown Protein
[Arabidopsis thaliana]
Length = 226
Score = 65.5 bits (158), Expect = 4e-10
Identities = 34/83 (40%), Positives = 48/83 (56%)
Frame = -3
Query: 418 VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSQGWVEFAGKSKLVVGDAC 239
+P+ F +Y + + I LQ +K WPV+ C K G K SQGW EF ++ + GD C
Sbjct: 146 LPSGFAEKYLSGISGFIKLQLGEKQWPVR--CLYKAGRAKFSQGWYEFTLENNIGEGDVC 203
Query: 238 VFELINKEDPVLDVHIFRGH*YL 170
VFEL+ D VL+V FR + Y+
Sbjct: 204 VFELLRTRDFVLEVTAFRVNEYV 226
>gb|AAK68808.1| Unknown protein [Arabidopsis thaliana]
Length = 226
Score = 65.5 bits (158), Expect = 4e-10
Identities = 34/83 (40%), Positives = 48/83 (56%)
Frame = -3
Query: 418 VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSQGWVEFAGKSKLVVGDAC 239
+P+ F +Y + + I LQ +K WPV+ C K G K SQGW EF ++ + GD C
Sbjct: 146 LPSGFAEKYLSGISGFIKLQLGEKQWPVR--CLYKAGRAKFSQGWYEFTLENNIGEGDVC 203
Query: 238 VFELINKEDPVLDVHIFRGH*YL 170
VFEL+ D VL+V FR + Y+
Sbjct: 204 VFELLRTRDFVLEVTAFRVNEYV 226
>ref|NP_188529.1| unknown protein; protein id: At3g18990.1 [Arabidopsis thaliana]
Length = 232
Score = 64.3 bits (155), Expect = 8e-10
Identities = 34/83 (40%), Positives = 47/83 (55%)
Frame = -3
Query: 418 VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSQGWVEFAGKSKLVVGDAC 239
+P+ F +Y + + I +Q +K WPV+ C K G K SQGW EF ++ L GD C
Sbjct: 152 LPSGFAEKYLSGISGFIKVQLAEKQWPVR--CLYKAGRAKFSQGWYEFTLENNLGEGDVC 209
Query: 238 VFELINKEDPVLDVHIFRGH*YL 170
VFEL+ D VL V FR + Y+
Sbjct: 210 VFELLRTRDFVLKVTAFRVNEYV 232
>dbj|BAB01695.1| gb|AAD43153.1~gene_id:K13E13.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 230
Score = 64.3 bits (155), Expect = 8e-10
Identities = 34/83 (40%), Positives = 47/83 (55%)
Frame = -3
Query: 418 VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSQGWVEFAGKSKLVVGDAC 239
+P+ F +Y + + I +Q +K WPV+ C K G K SQGW EF ++ L GD C
Sbjct: 150 LPSGFAEKYLSGISGFIKVQLAEKQWPVR--CLYKAGRAKFSQGWYEFTLENNLGEGDVC 207
Query: 238 VFELINKEDPVLDVHIFRGH*YL 170
VFEL+ D VL V FR + Y+
Sbjct: 208 VFELLRTRDFVLKVTAFRVNEYV 230
>gb|AAM76972.1|AF289051_1 reduced vernalization response 1 [Arabidopsis thaliana]
gi|21734796|gb|AAM76973.1|AF289052_1 reduced
vernalization response 1 [Arabidopsis thaliana]
Length = 341
Score = 64.3 bits (155), Expect = 8e-10
Identities = 34/83 (40%), Positives = 47/83 (55%)
Frame = -3
Query: 418 VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSQGWVEFAGKSKLVVGDAC 239
+P+ F +Y + + I +Q +K WPV+ C K G K SQGW EF ++ L GD C
Sbjct: 261 LPSGFAEKYLSGISGFIKVQLAEKQWPVR--CLYKAGRAKFSQGWYEFTLENNLGEGDVC 318
Query: 238 VFELINKEDPVLDVHIFRGH*YL 170
VFEL+ D VL V FR + Y+
Sbjct: 319 VFELLRTRDFVLKVTAFRVNEYV 341
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,339,336
Number of Sequences: 1393205
Number of extensions: 8842461
Number of successful extensions: 18580
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 18079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18573
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
