>KMC009856A_C01 KMC009856A_c01
ggtacaATGATATACTTTTATTGAACTAATGAATACCAATCCAAAATCTAATAGAACAAT
GGCAAACATTATAGCAACAAAACTTACTTTCGAAAGGGAAAAAATTGGATAGTCATTAGA
TTAAAAGCACAACCTGATTTGGGATGTATAAAATAATACTCATTCTGGAGAAACAGCTCG
ACTGAAACTCATGACAACTTCCTGAAGGTCTTAGCGTTTTCCACGGCTTCTTACATACGA
GTTGCGTGCTAGTAATTTCTGGCTCGAAGTCAACCGTTCACCCTGCAAGAAACATGTCAA
GCAGCAAGAACCTTCCACAGCCAATAACAATCTAATCTAATAAGCTGCACCATTAAATTG
AATGCCTTATTACATCACAATGGTTTTATAAAAAAACTTGGGAGCAATGTCTCCTTCTAG
GTAACAGAAGTTGCAAATnGGAGTCATACATAGATAGAAGAAAACCCAACTCCAAGCCAA
CAAAAATAGATTTGTAAAATngtaagtgctccagaagtttt

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC009856A_C01 KMC009856A_c01
         (521 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_615052.1| predicted protein [Methanosarcina acetivorans s...    33  2.0

>ref|NP_615052.1| predicted protein [Methanosarcina acetivorans str. C2A]
           gi|19913827|gb|AAM03532.1| predicted protein
           [Methanosarcina acetivorans str. C2A]
          Length = 394

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 27/86 (31%), Positives = 37/86 (42%), Gaps = 5/86 (5%)
 Frame = +3

Query: 210 LSVFHGFLHTSCV---LVISGSKSTVHPARNMSSSKNLPQPITI*SNKLHH*IECLITSQ 380
           LS F G L  +C     ++ GS S     RN+  +  +    TI  N     +   I   
Sbjct: 175 LSWFRG-LRQTCTHVRFIVGGSVSIERVLRNVGGTNVINDFKTIRVNGFERDVALQIVKN 233

Query: 381 WFYKKTWEQCLLLGNR--SCKXESYI 452
            F ++ WE   LLGN+   C  ESYI
Sbjct: 234 GFEEEDWEYTPLLGNKILDCVGESYI 259

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,463,907
Number of Sequences: 1393205
Number of extensions: 8137554
Number of successful extensions: 15323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15321
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR030e05_f BP078312 1 434 2 MFB039e04_f BP036861 7 522

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