Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009826A_C01 KMC009826A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193438.2| hypothetical protein; protein id: At4g17050.1 [... 222 2e-57
pir||H71438 hypothetical protein - Arabidopsis thaliana gi|22450... 185 4e-46
ref|NP_294876.1| conserved hypothetical protein [Deinococcus rad... 122 4e-27
dbj|BAC66223.1| OJ1058_B11.16 [Oryza sativa (japonica cultivar-g... 97 3e-23
gb|ZP_00098988.1| hypothetical protein [Desulfitobacterium hafni... 95 8e-19
>ref|NP_193438.2| hypothetical protein; protein id: At4g17050.1 [Arabidopsis
thaliana] gi|26451095|dbj|BAC42652.1| unknown protein
[Arabidopsis thaliana]
Length = 298
Score = 222 bits (566), Expect = 2e-57
Identities = 104/120 (86%), Positives = 111/120 (91%)
Frame = -1
Query: 589 LPNHVPEPLVNSTDKQPLLETPGEVFELRKLLPTSLAYDFNIHIMDFQPGEFLNVKEVHY 410
L +H E +V STDKQPLLETPGEVFELRKLLP S+AYDFNIH MDFQPGEFLNVKEVHY
Sbjct: 179 LGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHY 238
Query: 409 NQHGLLLLEGQGIYRLADSWYPVQAGDVIWMAPFVPQWYAALGKTPTRYLLYQDVNRSPL 230
NQHGLLLLEGQGIYRL D+WYPVQAGDVIWMAPFVPQWYAALGKT +RYLLY+DVNR+PL
Sbjct: 239 NQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298
>pir||H71438 hypothetical protein - Arabidopsis thaliana
gi|2245062|emb|CAB10485.1| hypothetical protein
[Arabidopsis thaliana] gi|7268456|emb|CAB80976.1|
hypothetical protein [Arabidopsis thaliana]
Length = 313
Score = 185 bits (469), Expect = 4e-46
Identities = 85/96 (88%), Positives = 89/96 (92%)
Frame = -1
Query: 583 NHVPEPLVNSTDKQPLLETPGEVFELRKLLPTSLAYDFNIHIMDFQPGEFLNVKEVHYNQ 404
+H E +V STDKQPLLETPGEVFELRKLLP S+AYDFNIH MDFQPGEFLNVKEVHYNQ
Sbjct: 138 SHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQ 197
Query: 403 HGLLLLEGQGIYRLADSWYPVQAGDVIWMAPFVPQW 296
HGLLLLEGQGIYRL D+WYPVQAGDVIWMAPFVPQW
Sbjct: 198 HGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQW 233
>ref|NP_294876.1| conserved hypothetical protein [Deinococcus radiodurans]
gi|7471362|pir||B75432 conserved hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6458889|gb|AAF10724.1|AE001964_8 conserved
hypothetical protein [Deinococcus radiodurans]
Length = 246
Score = 122 bits (305), Expect = 4e-27
Identities = 57/107 (53%), Positives = 73/107 (67%), Gaps = 6/107 (5%)
Frame = -1
Query: 532 ETPGEVFE------LRKLLPTSLAYDFNIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGI 371
E PG FE RKLLP A+DF + M F PG L EVHY +HGLL+LEG+G+
Sbjct: 139 ENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGL 198
Query: 370 YRLADSWYPVQAGDVIWMAPFVPQWYAALGKTPTRYLLYQDVNRSPL 230
Y+L +++YPV AGD+IWM PQWY ALG+ ++YLLY+D+NR PL
Sbjct: 199 YKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNRHPL 245
>dbj|BAC66223.1| OJ1058_B11.16 [Oryza sativa (japonica cultivar-group)]
Length = 497
Score = 96.7 bits (239), Expect(2) = 3e-23
Identities = 45/51 (88%), Positives = 48/51 (93%)
Frame = -1
Query: 574 PEPLVNSTDKQPLLETPGEVFELRKLLPTSLAYDFNIHIMDFQPGEFLNVK 422
P+ +V STDKQPLLETPGEVFELRKLLPTSL YDFNIHIMDFQPGE+LNVK
Sbjct: 174 PDLIVGSTDKQPLLETPGEVFELRKLLPTSLPYDFNIHIMDFQPGEYLNVK 224
Score = 33.5 bits (75), Expect(2) = 3e-23
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 384 KGKAFIAWLIVGTRFKRVM*FGWHHLSHNGMLP*GKLQHG 265
+ K + W GTR + FGWH L NG LP K + G
Sbjct: 225 RDKEYTDWETAGTRCNQGTPFGWHRLCLNGTLPLEKPRRG 264
>gb|ZP_00098988.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 253
Score = 94.7 bits (234), Expect = 8e-19
Identities = 45/119 (37%), Positives = 64/119 (52%), Gaps = 1/119 (0%)
Frame = -1
Query: 592 PLPNHVPEPLVNSTDKQPLLETPG-EVFELRKLLPTSLAYDFNIHIMDFQPGEFLNVKEV 416
P+ H +V + P G E ++ LLPT L +D N H++ F PG E
Sbjct: 131 PVEGHAARIVVGRLNDMPYAPYDGMENVRIKDLLPTDLGFDVNFHVLSFLPGGCHPFIET 190
Query: 415 HYNQHGLLLLEGQGIYRLADSWYPVQAGDVIWMAPFVPQWYAALGKTPTRYLLYQDVNR 239
H +HGL LLEG+G+Y + + W PV+ D IW P+VPQ +G+TP Y+ +D NR
Sbjct: 191 HVQEHGLYLLEGEGVYLIDERWIPVKKEDFIWFGPYVPQACYGVGRTPFTYIYTKDCNR 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,113,193
Number of Sequences: 1393205
Number of extensions: 11763990
Number of successful extensions: 36917
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 35780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36906
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
