Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009823A_C01 KMC009823A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM55305.1| auxin influx carrier protein [Medicago truncatula] 167 8e-41
emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula... 165 3e-40
ref|NP_195744.1| LAX1 / AUX1 -like permease; protein id: At5g012... 159 3e-38
ref|NP_565882.1| expressed protein; protein id: At2g38120.1, sup... 155 3e-37
dbj|BAC03319.1| putative AUX1-like permease [Oryza sativa (japon... 152 3e-36
>gb|AAM55305.1| auxin influx carrier protein [Medicago truncatula]
Length = 482
Score = 167 bits (423), Expect = 8e-41
Identities = 77/93 (82%), Positives = 83/93 (88%)
Frame = -3
Query: 546 PAIAHMLTYRTASARKNAAEKPPFFLPSWTAMFVFNAFIVVWVLVIGFGFGGWASMTHFI 367
PA+AHMLTYRTASARKNA EKPP FLPSWTA++V NAFIVVWVLV+GFGFGGWASMT+FI
Sbjct: 393 PALAHMLTYRTASARKNAVEKPPSFLPSWTAVYVLNAFIVVWVLVVGFGFGGWASMTNFI 452
Query: 366 RPIDTFGLFAKCYQCKPPTPPLATAAPASHAHH 268
R IDTFGLFAKCYQCKPPTPP AP+ HA H
Sbjct: 453 RQIDTFGLFAKCYQCKPPTPP---QAPSPHARH 482
>emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula]
gi|21586462|gb|AAM55304.1| auxin influx carrier protein
[Medicago truncatula]
Length = 484
Score = 165 bits (418), Expect = 3e-40
Identities = 75/93 (80%), Positives = 83/93 (88%)
Frame = -3
Query: 546 PAIAHMLTYRTASARKNAAEKPPFFLPSWTAMFVFNAFIVVWVLVIGFGFGGWASMTHFI 367
P+ AHMLTYR ASARKNAAEKPPFF+PSWTAM++FNAFIV+WVLV+GFGFGGWASMT+FI
Sbjct: 393 PSAAHMLTYRKASARKNAAEKPPFFMPSWTAMYIFNAFIVIWVLVVGFGFGGWASMTNFI 452
Query: 366 RPIDTFGLFAKCYQCKPPTPPLATAAPASHAHH 268
R IDTFGLFAKCYQCKP PP+ AAP HA H
Sbjct: 453 RQIDTFGLFAKCYQCKP--PPVMAAAPPPHALH 483
>ref|NP_195744.1| LAX1 / AUX1 -like permease; protein id: At5g01240.1 [Arabidopsis
thaliana] gi|11282415|pir||T45964 LAX1 / AUX1-like
permease - Arabidopsis thaliana
gi|6759447|emb|CAB69852.1| LAX1 / AUX1-like permease
[Arabidopsis thaliana]
Length = 488
Score = 159 bits (401), Expect = 3e-38
Identities = 72/94 (76%), Positives = 81/94 (85%)
Frame = -3
Query: 546 PAIAHMLTYRTASARKNAAEKPPFFLPSWTAMFVFNAFIVVWVLVIGFGFGGWASMTHFI 367
PA+AHMLTYRTASAR+NAAEKPPFF+PSW ++V NAFIVVWVLV+GFGFGGWASMT+FI
Sbjct: 399 PALAHMLTYRTASARRNAAEKPPFFIPSWAGVYVINAFIVVWVLVLGFGFGGWASMTNFI 458
Query: 366 RPIDTFGLFAKCYQCKPPTPPLATAAPASHAHHQ 265
R IDTFGLFAKCYQCKPP P+A AHH+
Sbjct: 459 RQIDTFGLFAKCYQCKPPPAPIAAG-----AHHR 487
>ref|NP_565882.1| expressed protein; protein id: At2g38120.1, supported by cDNA:
31586., supported by cDNA: gi_15450815, supported by
cDNA: gi_20259903 [Arabidopsis thaliana]
gi|7485590|pir||T01244 hypothetical protein At2g38120
[imported] - Arabidopsis thaliana
gi|1531758|emb|CAA67308.1| AUX1 [Arabidopsis thaliana]
gi|3335360|gb|AAC27161.1| expressed protein [Arabidopsis
thaliana] gi|15450816|gb|AAK96679.1| Unknown protein
[Arabidopsis thaliana] gi|20259904|gb|AAM13299.1|
unknown protein [Arabidopsis thaliana]
gi|21592703|gb|AAM64652.1| LAX1 / AUX1-like permease
[Arabidopsis thaliana]
Length = 485
Score = 155 bits (392), Expect = 3e-37
Identities = 68/94 (72%), Positives = 82/94 (86%)
Frame = -3
Query: 546 PAIAHMLTYRTASARKNAAEKPPFFLPSWTAMFVFNAFIVVWVLVIGFGFGGWASMTHFI 367
P++AHMLTYR+ASAR+NAAEKPPFF+PSWTAM+V NAF+VVWVL++GFGFGGWAS+T+F+
Sbjct: 393 PSLAHMLTYRSASARQNAAEKPPFFMPSWTAMYVLNAFVVVWVLIVGFGFGGWASVTNFV 452
Query: 366 RPIDTFGLFAKCYQCKPPTPPLATAAPASHAHHQ 265
R +DTFGLFAKCYQCKP A AP S HH+
Sbjct: 453 RQVDTFGLFAKCYQCKPAA--AAAHAPVSALHHR 484
>dbj|BAC03319.1| putative AUX1-like permease [Oryza sativa (japonica
cultivar-group)]
Length = 492
Score = 152 bits (383), Expect = 3e-36
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3
Query: 546 PAIAHMLTYRTASARKNAAEKPPFFLPSWTAMFVFNAFIVVWVLVIGFGFGGWASMTHFI 367
PA+AH+LTYRTASAR NAAEKPPFFLPSWT MFV N FIVVWVLV+GFG GGWASM +FI
Sbjct: 401 PALAHILTYRTASARMNAAEKPPFFLPSWTGMFVLNMFIVVWVLVVGFGLGGWASMVNFI 460
Query: 366 RPIDTFGLFAKCYQCKPPTPPLATAAPASHAHH 268
R IDTFGLFAKCYQC P P LA +P HH
Sbjct: 461 RQIDTFGLFAKCYQCPKPAPALA-QSPVPLPHH 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,043,486
Number of Sequences: 1393205
Number of extensions: 13013743
Number of successful extensions: 36520
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 34324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36432
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
