Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009812A_C01 KMC009812A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O24467|L14B_PRUAR LEC14B homolog gi|2351587|gb|AAB88274.1| LE... 154 8e-37
pir||T01391 WD-repeat protein T4I9.10 - Arabidopsis thaliana gi|... 150 7e-36
ref|NP_192211.2| putative WD-repeat protein; protein id: At4g030... 150 7e-36
sp|Q40153|L14B_LITER LEC14B protein gi|1181604|dbj|BAA11768.1| L... 139 2e-32
gb|AAH45232.1| Similar to RIKEN cDNA 0710008A13 gene [Xenopus la... 95 6e-19
>sp|O24467|L14B_PRUAR LEC14B homolog gi|2351587|gb|AAB88274.1| LEC14B homolog [Prunus
armeniaca]
Length = 475
Score = 154 bits (388), Expect = 8e-37
Identities = 68/93 (73%), Positives = 77/93 (82%), Gaps = 3/93 (3%)
Frame = -1
Query: 524 TLVRCYFSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMM 345
TL+RCY SP+YSTGQKYIYTGSSD V+IYDLVTGAQVA+L+HHE PVRDCSWHP YPM+
Sbjct: 381 TLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRDCSWHPLYPML 440
Query: 344 ISSAWDGDIVRWEFPGSDEAPA---PRNRRAGR 255
+SS+WDG I RWEFPG D+ P PR RR R
Sbjct: 441 VSSSWDGTIARWEFPGDDQVPTLERPRARRKER 473
>pir||T01391 WD-repeat protein T4I9.10 - Arabidopsis thaliana
gi|3924603|gb|AAC79104.1| putative WD-repeat protein
[Arabidopsis thaliana] gi|7269787|emb|CAB77787.1|
putative WD-repeat protein [Arabidopsis thaliana]
Length = 555
Score = 150 bits (380), Expect = 7e-36
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = -1
Query: 524 TLVRCYFSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMM 345
TL+RCYFSP++STGQKYIYTGS+DSSV+IYDLV+G +VA L HH +PVRDC+WHPYYP +
Sbjct: 461 TLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTL 520
Query: 344 ISSAWDGDIVRWEFPGSDEAPAPRNRRAGR 255
ISS+WDGD+V+WEFPGS EAP +R R
Sbjct: 521 ISSSWDGDLVKWEFPGSGEAPIMSKKRVRR 550
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 506 FSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWD 327
FS +ST + + GSSD S+++YDL + H + V + +I S D
Sbjct: 295 FSVKFSTDGREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSD 354
Query: 326 GDIVR-WE---FPGSDE 288
++ + W+ F G D+
Sbjct: 355 DNLCKVWDRRCFIGRDK 371
>ref|NP_192211.2| putative WD-repeat protein; protein id: At4g03020.1, supported by
cDNA: gi_20466537 [Arabidopsis thaliana]
gi|20466538|gb|AAM20586.1| putative WD-repeat protein
[Arabidopsis thaliana] gi|23198298|gb|AAN15676.1|
putative WD-repeat protein [Arabidopsis thaliana]
Length = 493
Score = 150 bits (380), Expect = 7e-36
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = -1
Query: 524 TLVRCYFSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMM 345
TL+RCYFSP++STGQKYIYTGS+DSSV+IYDLV+G +VA L HH +PVRDC+WHPYYP +
Sbjct: 399 TLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTL 458
Query: 344 ISSAWDGDIVRWEFPGSDEAPAPRNRRAGR 255
ISS+WDGD+V+WEFPGS EAP +R R
Sbjct: 459 ISSSWDGDLVKWEFPGSGEAPIMSKKRVRR 488
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -1
Query: 506 FSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWD 327
FS +ST + + GSSD S+++YDL + H + V + +I S D
Sbjct: 233 FSVKFSTDGREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSD 292
Query: 326 GDIVR-WE---FPGSDE 288
++ + W+ F G D+
Sbjct: 293 DNLCKVWDRRCFIGRDK 309
>sp|Q40153|L14B_LITER LEC14B protein gi|1181604|dbj|BAA11768.1| LEC14B protein
[Lithospermum erythrorhizon]
Length = 473
Score = 139 bits (350), Expect = 2e-32
Identities = 59/87 (67%), Positives = 75/87 (85%)
Frame = -1
Query: 524 TLVRCYFSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMM 345
TL+RCYFSP YSTGQKYIYTGS D++V+IYDLVTG QV+ L +H+A VRDCSWHP YPM+
Sbjct: 383 TLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVRDCSWHPNYPML 442
Query: 344 ISSAWDGDIVRWEFPGSDEAPAPRNRR 264
+SS++DG+IV+WE+ G+DEAP N +
Sbjct: 443 VSSSFDGEIVKWEYRGNDEAPVQGNNQ 469
Score = 33.1 bits (74), Expect = 2.0
Identities = 19/68 (27%), Positives = 33/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 506 FSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWD 327
FS +ST + I G+SD S+ +YDL ++ HE+ V + +I S D
Sbjct: 218 FSIKFSTDGREIVAGTSDESICVYDLEADRLSLRISAHESDVNSVCFADESGHLIYSGSD 277
Query: 326 GDIVR-WE 306
++ + W+
Sbjct: 278 DNLCKVWD 285
>gb|AAH45232.1| Similar to RIKEN cDNA 0710008A13 gene [Xenopus laevis]
Length = 525
Score = 94.7 bits (234), Expect = 6e-19
Identities = 41/81 (50%), Positives = 59/81 (72%)
Frame = -1
Query: 524 TLVRCYFSPSYSTGQKYIYTGSSDSSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMM 345
TL+RC FSP+YSTGQ+++Y+G S V +YDL+TG V KL +H+A VRD SWHP +
Sbjct: 434 TLIRCRFSPAYSTGQQFVYSGCSTGRVVVYDLLTGQIVKKLTNHKACVRDVSWHPCDNKL 493
Query: 344 ISSAWDGDIVRWEFPGSDEAP 282
+SS+WDG++ WE+ ++ P
Sbjct: 494 VSSSWDGNLRVWEYRQAEFYP 514
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,407,449
Number of Sequences: 1393205
Number of extensions: 9762655
Number of successful extensions: 28130
Number of sequences better than 10.0: 620
Number of HSP's better than 10.0 without gapping: 26290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28079
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
