Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009799A_C01 KMC009799A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97293.1| gb|AAF03448.1~gene_id:MXK3.3~similar to unknown ... 155 3e-37
ref|NP_568996.1| Expressed protein; protein id: At5g64813.1 [Ara... 155 3e-37
gb|AAL01181.1|AC079843_21 Putative GTP-BINDING PROTEIN YPTV3 [Or... 137 1e-31
ref|NP_196553.1| unknown protein; protein id: At5g09910.1 [Arabi... 118 3e-27
gb|EAA28122.1| predicted protein [Neurospora crassa] 40 0.028
>dbj|BAA97293.1| gb|AAF03448.1~gene_id:MXK3.3~similar to unknown protein
[Arabidopsis thaliana]
Length = 651
Score = 155 bits (393), Expect = 3e-37
Identities = 82/119 (68%), Positives = 93/119 (77%), Gaps = 2/119 (1%)
Frame = -1
Query: 654 SSEELPLTESFPGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDELPEPA-WSIPSVQ 478
SSE+LPL ESFPG+GGLIAAAKE RYDKE + KFFRMLIRRRYFSDELP + WSI V
Sbjct: 313 SSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELPAASPWSISPVP 372
Query: 477 RPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKY-NMLPPLPAQRNLTPPPTLYPQQPVSS 304
+ QR+D+ DD+Q Y R S DP+KY N +PPLPAQRNLTPPPTLYPQQPVS+
Sbjct: 373 TSSSQRLDE-ITSDDDQFYK-RTSFHGDPYKYNNTIPPLPAQRNLTPPPTLYPQQPVST 429
>ref|NP_568996.1| Expressed protein; protein id: At5g64813.1 [Arabidopsis thaliana]
gi|13430582|gb|AAK25913.1|AF360203_1 unknown protein
[Arabidopsis thaliana] gi|14532852|gb|AAK64108.1|
unknown protein [Arabidopsis thaliana]
Length = 342
Score = 155 bits (393), Expect = 3e-37
Identities = 82/119 (68%), Positives = 93/119 (77%), Gaps = 2/119 (1%)
Frame = -1
Query: 654 SSEELPLTESFPGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDELPEPA-WSIPSVQ 478
SSE+LPL ESFPG+GGLIAAAKE RYDKE + KFFRMLIRRRYFSDELP + WSI V
Sbjct: 194 SSEDLPLFESFPGNGGLIAAAKETRYDKEALNKFFRMLIRRRYFSDELPAASPWSISPVP 253
Query: 477 RPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKY-NMLPPLPAQRNLTPPPTLYPQQPVSS 304
+ QR+D+ DD+Q Y R S DP+KY N +PPLPAQRNLTPPPTLYPQQPVS+
Sbjct: 254 TSSSQRLDE-ITSDDDQFYK-RTSFHGDPYKYNNTIPPLPAQRNLTPPPTLYPQQPVST 310
Score = 37.7 bits (86), Expect = 0.14
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -2
Query: 371 LPFQLNAI*LHHPRSILNSQFPVS--ENYSFPRFSLSGSSEISS--SARTKRSDINV 213
LP Q N P L Q PVS +NY+ PR+SLS E ++ SAR+KR DINV
Sbjct: 290 LPAQRNLT----PPPTLYPQQPVSTPDNYTIPRYSLSSVQETTNNGSARSKRMDINV 342
>gb|AAL01181.1|AC079843_21 Putative GTP-BINDING PROTEIN YPTV3 [Oryza sativa]
Length = 354
Score = 137 bits (346), Expect = 1e-31
Identities = 72/123 (58%), Positives = 88/123 (71%), Gaps = 4/123 (3%)
Frame = -1
Query: 660 LPSSEELPLTESFPGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDELPEPA-WSIPS 484
LPSSEELPL ESFPG+ GL+ AAK ARYDKE ++KFFRMLIRRRYFS+ELP P+ WS+
Sbjct: 210 LPSSEELPLAESFPGNSGLLTAAKVARYDKEALVKFFRMLIRRRYFSNELPAPSPWSLTP 269
Query: 483 VQ---RPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKYNMLPPLPAQRNLTPPPTLYPQQP 313
+ P + DD + R+S + +KY+ + PLPAQRNLTPPPTLYPQQP
Sbjct: 270 REDTILPVETTNDDDLFQ--------RKSYAGQSYKYSGVTPLPAQRNLTPPPTLYPQQP 321
Query: 312 VSS 304
+SS
Sbjct: 322 MSS 324
Score = 32.7 bits (73), Expect = 4.4
Identities = 25/56 (44%), Positives = 30/56 (52%), Gaps = 3/56 (5%)
Frame = -2
Query: 371 LPFQLNAI*LHHPRSILNSQFPVS---ENYSFPRFSLSGSSEISSSARTKRSDINV 213
LP Q N P L Q P+S ENY + RFS S + SSS RT R+DIN+
Sbjct: 304 LPAQRNLT----PPPTLYPQQPMSSSSENYRYHRFSSSAIPDASSS-RTNRADINI 354
>ref|NP_196553.1| unknown protein; protein id: At5g09910.1 [Arabidopsis thaliana]
gi|9758969|dbj|BAB09412.1| gene_id:MYH9.12~unknown
protein [Arabidopsis thaliana]
Length = 431
Score = 118 bits (296), Expect(2) = 3e-27
Identities = 66/118 (55%), Positives = 76/118 (63%), Gaps = 2/118 (1%)
Frame = -1
Query: 660 LPSSEELPLTESFPGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDELPEP--AWSIP 487
LP S+ELPL+ESFP + GLI AAKEARYDKE + K F MLIRRRYFSDELP P AWS+
Sbjct: 178 LPHSDELPLSESFPSNVGLIMAAKEARYDKEALTKIFHMLIRRRYFSDELPSPSSAWSL- 236
Query: 486 SVQRPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKYNMLPPLPAQRNLTPPPTLYPQQP 313
QR+D+ D++Q Y D +KYN LP Q NL PTLYPQQP
Sbjct: 237 --SHAPSQRLDEG-TSDEDQFYKRTSLREGDAYKYNTLP----QHNLMQSPTLYPQQP 287
Score = 25.4 bits (54), Expect(2) = 3e-27
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 314 QFPVSENYSFPRFSLSGSSEISSS 243
Q P NY+ PRFSLS E S++
Sbjct: 286 QPPDRYNYAIPRFSLSSVEETSNA 309
>gb|EAA28122.1| predicted protein [Neurospora crassa]
Length = 382
Score = 40.0 bits (92), Expect = 0.028
Identities = 25/69 (36%), Positives = 38/69 (54%)
Frame = -1
Query: 540 IRRRYFSDELPEPAWSIPSVQRPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKYNMLPPLP 361
+RR +DELPE + +V+RPA I D +E++ S S+ ++ L P P
Sbjct: 168 LRRFLSNDELPEEEYQ--TVERPAIT-IPDDIVEENEDDDMFATSAVSEYMQFTGLSPPP 224
Query: 360 AQRNLTPPP 334
+QR+LTP P
Sbjct: 225 SQRSLTPSP 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,241,793
Number of Sequences: 1393205
Number of extensions: 11407560
Number of successful extensions: 36326
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36142
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
