Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009798A_C01 KMC009798A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174105.2| G-protein beta-subunit (transducin) family; pro... 132 4e-30
ref|NP_173405.2| G-protein beta-subunit (transducin) family; pro... 128 5e-29
pir||F86330 F6F9.19 protein - Arabidopsis thaliana gi|10086500|g... 128 5e-29
ref|NP_173406.1| unknown protein [Arabidopsis thaliana] 128 5e-29
ref|NP_174104.1| hypothetical protein [Arabidopsis thaliana] gi|... 117 2e-25
>ref|NP_174105.2| G-protein beta-subunit (transducin) family; protein id:
At1g27840.1, supported by cDNA: gi_15982896, supported
by cDNA: gi_18377623, supported by cDNA: gi_20465582
[Arabidopsis thaliana] gi|15982897|gb|AAL09795.1|
At1g27840/F28L5_15 [Arabidopsis thaliana]
gi|18377624|gb|AAL66962.1| unknown protein [Arabidopsis
thaliana] gi|20465583|gb|AAM20274.1| unknown protein
[Arabidopsis thaliana]
Length = 450
Score = 132 bits (332), Expect = 4e-30
Identities = 62/99 (62%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Frame = -2
Query: 626 FETVRLQTNKPIQLATTQDSTPVFVPCMRAVKAFDMWSGNAHTILRGHYECVNSCWFNQQ 447
FET R+QTNK IQL T+ D VFVPCM+ VKAF MWSG +LRGHYE VN+C FN
Sbjct: 351 FETGRIQTNKGIQLDTSDDPALVFVPCMKTVKAFGMWSGRTTLMLRGHYESVNTCCFNSN 410
Query: 446 DQELYTGGNDRQILVWSPARSIADE-IEEGAAEDEDTWS 333
DQELYT G+DRQILVWSP ++ DE +++ AED+D WS
Sbjct: 411 DQELYTSGSDRQILVWSPGGTVEDEMVQDEVAEDKDNWS 449
>ref|NP_173405.2| G-protein beta-subunit (transducin) family; protein id: At1g19750.1
[Arabidopsis thaliana]
Length = 450
Score = 128 bits (322), Expect = 5e-29
Identities = 60/99 (60%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = -2
Query: 626 FETVRLQTNKPIQLATTQDSTPVFVPCMRAVKAFDMWSGNAHTILRGHYECVNSCWFNQQ 447
FET R+QT++ IQL T+ D VFVPCM+ VK F MWSG +LRGHYE VN+C FN
Sbjct: 351 FETGRIQTDRAIQLDTSDDPALVFVPCMKTVKGFGMWSGRTTLMLRGHYESVNTCCFNSN 410
Query: 446 DQELYTGGNDRQILVWSPARSIADEIEEG-AAEDEDTWS 333
DQELYT G DRQI+VWSP S+ DE+ +G AED+D WS
Sbjct: 411 DQELYTSGADRQIIVWSPGGSVEDEMAQGEVAEDKDNWS 449
>pir||F86330 F6F9.19 protein - Arabidopsis thaliana
gi|10086500|gb|AAG12560.1|AC007797_20 Unknown Protein
[Arabidopsis thaliana]
Length = 445
Score = 128 bits (322), Expect = 5e-29
Identities = 60/99 (60%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = -2
Query: 626 FETVRLQTNKPIQLATTQDSTPVFVPCMRAVKAFDMWSGNAHTILRGHYECVNSCWFNQQ 447
FET R+QT++ IQL T+ D VFVPCM+ VK F MWSG +LRGHYE VN+C FN
Sbjct: 346 FETGRIQTDRAIQLDTSDDPALVFVPCMKTVKGFGMWSGRTTLMLRGHYESVNTCCFNSN 405
Query: 446 DQELYTGGNDRQILVWSPARSIADEIEEG-AAEDEDTWS 333
DQELYT G DRQI+VWSP S+ DE+ +G AED+D WS
Sbjct: 406 DQELYTSGADRQIIVWSPGGSVEDEMAQGEVAEDKDNWS 444
>ref|NP_173406.1| unknown protein [Arabidopsis thaliana]
Length = 150
Score = 128 bits (322), Expect = 5e-29
Identities = 60/99 (60%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = -2
Query: 626 FETVRLQTNKPIQLATTQDSTPVFVPCMRAVKAFDMWSGNAHTILRGHYECVNSCWFNQQ 447
FET R+QT++ IQL T+ D VFVPCM+ VK F MWSG +LRGHYE VN+C FN
Sbjct: 51 FETGRIQTDRAIQLDTSDDPALVFVPCMKTVKGFGMWSGRTTLMLRGHYESVNTCCFNSN 110
Query: 446 DQELYTGGNDRQILVWSPARSIADEIEEG-AAEDEDTWS 333
DQELYT G DRQI+VWSP S+ DE+ +G AED+D WS
Sbjct: 111 DQELYTSGADRQIIVWSPGGSVEDEMAQGEVAEDKDNWS 149
>ref|NP_174104.1| hypothetical protein [Arabidopsis thaliana] gi|25518123|pir||D86403
hypothetical protein T22C5.29 - Arabidopsis thaliana
gi|6693030|gb|AAF24956.1|AC012375_19 T22C5.29
[Arabidopsis thaliana]
gi|12320887|gb|AAG50578.1|AC079280_9 hypothetical
protein [Arabidopsis thaliana]
Length = 179
Score = 117 bits (292), Expect = 2e-25
Identities = 62/128 (48%), Positives = 74/128 (57%), Gaps = 30/128 (23%)
Frame = -2
Query: 626 FETVRLQTNKPIQLATTQDSTPVFVPCMRAVK---------------------------- 531
FET R+QTNK IQL T+ D VFVPCM+ VK
Sbjct: 51 FETGRIQTNKGIQLDTSDDPALVFVPCMKTVKVVTNLLLYQHIFSFHYLDYLMNCAATVY 110
Query: 530 -AFDMWSGNAHTILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSIADE-IEEGA 357
AF MWSG +LRGHYE VN+C FN DQELYT G+DRQILVWSP ++ DE +++
Sbjct: 111 KAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVWSPGGTVEDEMVQDEV 170
Query: 356 AEDEDTWS 333
AED+D WS
Sbjct: 171 AEDKDNWS 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,502,256
Number of Sequences: 1393205
Number of extensions: 11317402
Number of successful extensions: 29353
Number of sequences better than 10.0: 234
Number of HSP's better than 10.0 without gapping: 26709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29320
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
