Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009784A_C01 KMC009784A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55706.1| P0453E05.22 [Oryza sativa (japonica cultivar-gro... 126 2e-28
ref|NP_568564.1| expressed protein; protein id: At5g39410.1, sup... 118 5e-26
gb|AAM60851.1| unknown [Arabidopsis thaliana] 117 6e-26
dbj|BAC11453.1| unnamed protein product [Homo sapiens] 75 4e-13
gb|AAH26185.1| Similar to CGI-49 protein [Homo sapiens] 75 4e-13
>dbj|BAC55706.1| P0453E05.22 [Oryza sativa (japonica cultivar-group)]
Length = 456
Score = 126 bits (316), Expect = 2e-28
Identities = 55/85 (64%), Positives = 72/85 (84%)
Frame = -3
Query: 511 SNESLPAQRNSKPDMEIVTRITGPEMGYVTTPIIMIQCALILHSQRKNLPKGGVYPPGII 332
S+ + + R SKPD EI+TR++GPE+GY+TTPI+++QCAL+L SQR NLPKGGVY PG +
Sbjct: 372 SDAARASDRGSKPDKEIITRVSGPEIGYITTPIVLVQCALVLLSQRGNLPKGGVYTPGAV 431
Query: 331 FGPTDLQQRLQPNGISFDVISKSTL 257
FGPTD+QQRLQ NG+SFD++S TL
Sbjct: 432 FGPTDIQQRLQENGLSFDLVSTRTL 456
>ref|NP_568564.1| expressed protein; protein id: At5g39410.1, supported by cDNA:
101366., supported by cDNA: gi_4099091 [Arabidopsis
thaliana] gi|4099092|gb|AAD09232.1| unknown [Arabidopsis
thaliana] gi|10177688|dbj|BAB11014.1|
gb|AAD09232.1~gene_id:MUL8.9~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 454
Score = 118 bits (295), Expect = 5e-26
Identities = 53/82 (64%), Positives = 70/82 (84%)
Frame = -3
Query: 511 SNESLPAQRNSKPDMEIVTRITGPEMGYVTTPIIMIQCALILHSQRKNLPKGGVYPPGII 332
S ESL +Q +KPD+EI+TRI+GPE+GY+TTPI ++QC LI+ QR++L KGGVY PGI+
Sbjct: 368 SEESLASQGETKPDLEIITRISGPEIGYITTPITLVQCGLIVLGQRESLVKGGVYTPGIV 427
Query: 331 FGPTDLQQRLQPNGISFDVISK 266
FG TD+QQRL+ NGISF++ISK
Sbjct: 428 FGSTDIQQRLEDNGISFELISK 449
>gb|AAM60851.1| unknown [Arabidopsis thaliana]
Length = 453
Score = 117 bits (294), Expect = 6e-26
Identities = 53/82 (64%), Positives = 70/82 (84%)
Frame = -3
Query: 511 SNESLPAQRNSKPDMEIVTRITGPEMGYVTTPIIMIQCALILHSQRKNLPKGGVYPPGII 332
S ESL +Q +KPD+EI+TRI+GPE+GY+TTPI ++QC LI+ QR++L KGGVY PGI+
Sbjct: 367 SEESLASQGETKPDLEIITRISGPEIGYITTPITLLQCGLIVLGQRESLVKGGVYTPGIV 426
Query: 331 FGPTDLQQRLQPNGISFDVISK 266
FG TD+QQRL+ NGISF++ISK
Sbjct: 427 FGSTDIQQRLEDNGISFELISK 448
>dbj|BAC11453.1| unnamed protein product [Homo sapiens]
Length = 429
Score = 75.1 bits (183), Expect = 4e-13
Identities = 38/74 (51%), Positives = 49/74 (65%), Gaps = 1/74 (1%)
Frame = -3
Query: 481 SKPDMEIVTRITGPEMGYVTTPIIMIQCALILHSQRKNLPK-GGVYPPGIIFGPTDLQQR 305
+KP+++I T++ GPE GYV TPI M+Q A+ L S +LPK GGV+ PG F T L R
Sbjct: 354 NKPNIKICTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDR 413
Query: 304 LQPNGISFDVISKS 263
L +GI F VIS S
Sbjct: 414 LNKHGIEFSVISSS 427
>gb|AAH26185.1| Similar to CGI-49 protein [Homo sapiens]
Length = 429
Score = 75.1 bits (183), Expect = 4e-13
Identities = 38/74 (51%), Positives = 49/74 (65%), Gaps = 1/74 (1%)
Frame = -3
Query: 481 SKPDMEIVTRITGPEMGYVTTPIIMIQCALILHSQRKNLPK-GGVYPPGIIFGPTDLQQR 305
+KP+++I T++ GPE GYV TPI M+Q A+ L S +LPK GGV+ PG F T L R
Sbjct: 354 NKPNIKICTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDR 413
Query: 304 LQPNGISFDVISKS 263
L +GI F VIS S
Sbjct: 414 LNKHGIEFSVISSS 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,101,034
Number of Sequences: 1393205
Number of extensions: 10229420
Number of successful extensions: 23144
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 22268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23115
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
