Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009773A_C01 KMC009773A_c01
(427 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO64812.1| At2g03510 [Arabidopsis thaliana] 55 2e-07
ref|NP_027545.1| expressed protein; protein id: At2g03510.1, sup... 55 2e-07
emb|CAB65197.1| hypothetical protein [Legionella pneumophila] 34 0.37
sp|Q93MM1|GALT_LACSK Galactose-1-phosphate uridylyltransferase (... 33 1.1
gb|AAM74513.1| At1g07230/F10K1_4 [Arabidopsis thaliana] gi|24417... 32 1.4
>gb|AAO64812.1| At2g03510 [Arabidopsis thaliana]
Length = 316
Score = 55.5 bits (132), Expect = 2e-07
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = -3
Query: 425 KFIESVTNNTKIFFGEKIPGMILDQRLLGNLLQEASR 315
KFI+++ NTKIFFG+K+P M+LDQRLLGN L +++
Sbjct: 268 KFIDAIARNTKIFFGDKVPNMVLDQRLLGNFLNHSTK 304
>ref|NP_027545.1| expressed protein; protein id: At2g03510.1, supported by cDNA:
41585. [Arabidopsis thaliana] gi|20197740|gb|AAD17426.2|
expressed protein [Arabidopsis thaliana]
gi|21593711|gb|AAM65678.1| unknown [Arabidopsis
thaliana]
Length = 356
Score = 55.5 bits (132), Expect = 2e-07
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = -3
Query: 425 KFIESVTNNTKIFFGEKIPGMILDQRLLGNLLQEASR 315
KFI+++ NTKIFFG+K+P M+LDQRLLGN L +++
Sbjct: 308 KFIDAIARNTKIFFGDKVPNMVLDQRLLGNFLNHSTK 344
>emb|CAB65197.1| hypothetical protein [Legionella pneumophila]
Length = 363
Score = 34.3 bits (77), Expect = 0.37
Identities = 20/85 (23%), Positives = 36/85 (41%), Gaps = 5/85 (5%)
Frame = -2
Query: 282 NSWSRSSDDLQALSTSARGFL-----TCYLLQYTMRSRKLLF*EAFYFSFYVEGNVDTRW 118
N W ++ L T +G L TC + + ++ L+ + F+F +G W
Sbjct: 275 NCWQALGQPMRDLETPIKGVLGSSQRTCLVAKQKLQPGSLISLDNTTFAFPCKGVPTQYW 334
Query: 117 SLLKPWRLENSHNIIYHISWYSLDE 43
L+ W L+N +I I W + +
Sbjct: 335 DLVNGWELQNKVSIGEPIKWSDIKQ 359
>sp|Q93MM1|GALT_LACSK Galactose-1-phosphate uridylyltransferase (Gal-1-P
uridylyltransferase)
gi|15217122|gb|AAK92518.1|AF401040_2 galactose
1-phosphate-uridyltransferase [Lactobacillus sakei]
Length = 498
Score = 32.7 bits (73), Expect = 1.1
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 404 NNTKIFFGEKIPGMILDQRLLGNLLQEASR--GAATKAKADI*ILGVGAQMTCKHYQHLR 231
N IF K M++DQ NLLQ + G + AD+ I+G G+ +T +HYQ R
Sbjct: 219 NEHSIFLDGKHEPMVIDQTTFKNLLQIVKQFPGYFAGSNADLPIVG-GSILTHEHYQGGR 277
Query: 230 ED 225
D
Sbjct: 278 HD 279
>gb|AAM74513.1| At1g07230/F10K1_4 [Arabidopsis thaliana]
gi|24417127|dbj|BAC22506.1| phosphatidylglycerol
specific phospholipase C [Arabidopsis thaliana]
Length = 533
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = +3
Query: 129 LRSPPHRKKSKKLPKIIVSYFSWCTVEDNRLGILSQMLIMLASHLSSD 272
+R P + +KLP++ +S W ED++L LI LAS L D
Sbjct: 416 IRDSPRQDCPEKLPEVKLSLRPWGAKEDSKLSEFQVELIQLASQLVGD 463
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,637,979
Number of Sequences: 1393205
Number of extensions: 7377070
Number of successful extensions: 18439
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 18005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18436
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
