Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009763A_C01 KMC009763A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_052168.1| recombination protein [Staphylococcus aureus] g... 34 1.0
gb|EAA21108.1| hypothetical protein [Plasmodium yoelii yoelii] 32 3.9
emb|CAC80814.1| polymerase [Stork hepatitis B virus] 32 5.0
emb|CAC80820.1| polymerase [Stork hepatitis B virus] 32 5.0
ref|NP_542345.1| polymerase [Stork hepatitis B virus] gi|1793288... 32 5.0
>ref|NP_052168.1| recombination protein [Staphylococcus aureus]
gi|1731452|gb|AAB48104.1| recombination protein
[Staphylococcus aureus]
Length = 403
Score = 34.3 bits (77), Expect = 1.0
Identities = 23/77 (29%), Positives = 41/77 (52%), Gaps = 3/77 (3%)
Frame = -3
Query: 537 VQAKINRSHLRVECNDVI---THMDHCLVQNDRSMDWDPMIDECQQVRYTGKRRFVSRNP 367
+Q + R + E D+ TH+++ LV ND +++ +IDE + YTGKR+ +
Sbjct: 20 IQKHVQRENNNYENEDIDHSKTHLNYALV-NDNKRNFNNLIDEKIEQNYTGKRKIRTDAV 78
Query: 366 SHGSNCLCGIISSVSSY 316
H + G+I+S S +
Sbjct: 79 KH----IDGLITSDSEF 91
>gb|EAA21108.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 537
Score = 32.3 bits (72), Expect = 3.9
Identities = 22/95 (23%), Positives = 47/95 (49%)
Frame = -1
Query: 347 CVV*SPQSLLTVQMLCEFVMFSLPQDFESSASPRHTSCKGPEIHSFC*LGRRRKNIITQP 168
C+V + + + L + + LP D S + T+ G +++SF + K ++ P
Sbjct: 256 CLVINEYNKGRYERLKQVLYKHLPNDLIKSGNLHITNYNGLQLNSFIRFQKFHKILLDVP 315
Query: 167 CQINKELINFGD*PVDSWGTTSAINSLVSIKANLI 63
C ++ LI G ++ W T ++I + +I+ +L+
Sbjct: 316 CSTDEHLIKKGTNDINKW-TFNSIKNNSNIQYDLL 349
>emb|CAC80814.1| polymerase [Stork hepatitis B virus]
Length = 790
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 129 TCRFLGYDFSHQFIGINKSKLNSIILVLLKLLLRFW 22
T RFLGY+ S+Q + I +S+ N + V+ K+ + W
Sbjct: 559 TIRFLGYEISNQHLKIEESRWNELRQVIKKIKVGQW 594
>emb|CAC80820.1| polymerase [Stork hepatitis B virus]
Length = 790
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 129 TCRFLGYDFSHQFIGINKSKLNSIILVLLKLLLRFW 22
T RFLGY+ S+Q + I +S+ N + V+ K+ + W
Sbjct: 559 TIRFLGYEISNQHLKIEESRWNELRQVIKKIKVGQW 594
>ref|NP_542345.1| polymerase [Stork hepatitis B virus] gi|17932882|emb|CAC80811.1|
polymerase [Stork hepatitis B virus]
Length = 790
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 129 TCRFLGYDFSHQFIGINKSKLNSIILVLLKLLLRFW 22
T RFLGY+ S+Q + I +S+ N + V+ K+ + W
Sbjct: 559 TIRFLGYEISNQHLKIEESRWNELRQVIKKIKVGQW 594
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,681,837
Number of Sequences: 1393205
Number of extensions: 10544171
Number of successful extensions: 21070
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21069
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
