Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009760A_C01 KMC009760A_c01
(387 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 143 5e-34
emb|CAA06853.1| 26S protease regulatory subunit 6 [Cicer arietinum] 142 1e-33
ref|NP_200637.1| 26S proteasome AAA-ATPase subunit RPT3; protein... 138 2e-32
dbj|BAB78494.1| 26S proteasome regulatory particle triple-A ATPa... 137 3e-32
sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 114 4e-25
>sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG gi|7435738|pir||T07110
vacuolar proton-ATPase chain E - potato
gi|1155334|gb|AAB67835.1| POTATP1
Length = 413
Score = 143 bits (361), Expect = 5e-34
Identities = 67/73 (91%), Positives = 72/73 (97%)
Frame = -3
Query: 385 QVCTAQMNLGDEVDLEDYVSRPDQISAAEISALCPEAGMHAVRKNRYVILPKDFEKGYRT 206
QVCTA+MNLGDEVDLEDYVSRPD+ISAAEI+A+C EAGMHAVRKNRYVILPKDFEKGYRT
Sbjct: 341 QVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRT 400
Query: 205 NVKKPDTDFEFYQ 167
NVKKPDTDFEFY+
Sbjct: 401 NVKKPDTDFEFYK 413
>emb|CAA06853.1| 26S protease regulatory subunit 6 [Cicer arietinum]
Length = 177
Score = 142 bits (358), Expect = 1e-33
Identities = 67/73 (91%), Positives = 71/73 (96%)
Frame = -3
Query: 385 QVCTAQMNLGDEVDLEDYVSRPDQISAAEISALCPEAGMHAVRKNRYVILPKDFEKGYRT 206
QVCTA+MNL DEVDLEDYVSRPD+ISAAEISA+C EAGMHAVRKNRYVILPKDFEKGYRT
Sbjct: 105 QVCTAKMNLSDEVDLEDYVSRPDKISAAEISAICQEAGMHAVRKNRYVILPKDFEKGYRT 164
Query: 205 NVKKPDTDFEFYQ 167
NVKKPDTDFEFY+
Sbjct: 165 NVKKPDTDFEFYK 177
>ref|NP_200637.1| 26S proteasome AAA-ATPase subunit RPT3; protein id: At5g58290.1,
supported by cDNA: gi_17979230, supported by cDNA:
gi_6652881 [Arabidopsis thaliana]
gi|28558168|sp|Q9SEI4|PRS6_ARATH 26S protease regulatory
subunit 6B homolog (26S proteasome AAA-ATPase subunit
RPT3) (Regulatory particle triple-A ATPase subunit 3)
gi|6652882|gb|AAF22523.1|AF123392_1 26S proteasome
AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
gi|8777330|dbj|BAA96920.1| 26S proteasome AAA-ATPase
subunit RPT3 [Arabidopsis thaliana]
gi|17979231|gb|AAL49932.1| AT4g10340/F24G24_140
[Arabidopsis thaliana]
Length = 408
Score = 138 bits (347), Expect = 2e-32
Identities = 64/73 (87%), Positives = 70/73 (95%)
Frame = -3
Query: 385 QVCTAQMNLGDEVDLEDYVSRPDQISAAEISALCPEAGMHAVRKNRYVILPKDFEKGYRT 206
QVCT++MNL DEVDLEDYVSRPD+ISAAEI+A+C EAGMHAVRKNRYVILPKDFEKGYR
Sbjct: 336 QVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRA 395
Query: 205 NVKKPDTDFEFYQ 167
NVKKPDTDFEFY+
Sbjct: 396 NVKKPDTDFEFYK 408
>dbj|BAB78494.1| 26S proteasome regulatory particle triple-A ATPase subunit3 [Oryza
sativa (japonica cultivar-group)]
Length = 368
Score = 137 bits (345), Expect = 3e-32
Identities = 63/73 (86%), Positives = 71/73 (96%)
Frame = -3
Query: 385 QVCTAQMNLGDEVDLEDYVSRPDQISAAEISALCPEAGMHAVRKNRYVILPKDFEKGYRT 206
QVCTA+MNL DEVDLEDYVSRPD+ISAA+I+A+C EAGMHAVRKNRYVILPKDFEKGYRT
Sbjct: 296 QVCTAKMNLSDEVDLEDYVSRPDKISAADIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 355
Query: 205 NVKKPDTDFEFYQ 167
NVKKP+TDF+FY+
Sbjct: 356 NVKKPETDFDFYK 368
>sp|P34123|PRS6_DICDI 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) gi|422298|pir||JN0611 probable transcription
factor DdTBP2 - slime mold (Dictyostelium discoideum)
gi|290055|gb|AAA33253.1| HIV1 TAT-binding protein
Length = 403
Score = 114 bits (284), Expect = 4e-25
Identities = 51/72 (70%), Positives = 62/72 (85%)
Frame = -3
Query: 385 QVCTAQMNLGDEVDLEDYVSRPDQISAAEISALCPEAGMHAVRKNRYVILPKDFEKGYRT 206
QV T++MNL DEVDLEDYVSRPD++S AEI ++C EAGMHA+RKNRYVILPKDFEKGY+
Sbjct: 331 QVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKA 390
Query: 205 NVKKPDTDFEFY 170
++KK +F FY
Sbjct: 391 SIKKNTHEFNFY 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 323,031,954
Number of Sequences: 1393205
Number of extensions: 6355547
Number of successful extensions: 16077
Number of sequences better than 10.0: 351
Number of HSP's better than 10.0 without gapping: 15750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16075
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
