Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009757A_C01 KMC009757A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining ... 42 0.003
gb|AAD23383.1|AF108140_1 gamete-specific homeodomain protein GSP... 42 0.005
gb|AAO00994.1| CG32170-PA [Drosophila erecta] 39 0.023
sp|P33293|BAF1_KLUMA TRANSCRIPTION FACTOR BAF1 (ARS BINDING FACT... 39 0.023
gb|AAD39751.1|AF128626_1 RNA binding protein PufA [Dictyostelium... 39 0.030
>gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining region Y protein
(Testis-determining factor) [Dictyostelium discoideum]
Length = 1461
Score = 42.4 bits (98), Expect = 0.003
Identities = 15/19 (78%), Positives = 17/19 (88%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQHQQQ 424
HQHQHQQ +H+HQHQHQ Q
Sbjct: 1068 HQHQHQQHQHQHQHQHQHQ 1086
Score = 40.8 bits (94), Expect = 0.008
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQ 424
H QHQHQ +H+HQHQHQ Q
Sbjct: 1065 HQQHQHQHQQHQHQHQHQHQ 1084
Score = 38.9 bits (89), Expect = 0.030
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQTPRNDDSQ 400
HQHQHQ Q +H+HQHQHQ Q ++ Q
Sbjct: 1089 HQHQHQHQHQHQHQHQHQHQHQQHQQHQ 1116
Score = 38.5 bits (88), Expect = 0.040
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQTPRNDDSQ 400
HQHQHQ Q +H+HQHQHQQ Q
Sbjct: 1093 HQHQHQHQHQHQHQHQHQQHQQHQQHQQ 1120
Score = 38.1 bits (87), Expect = 0.052
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQTPRNDDSQ 400
HQHQHQ Q +H+HQHQHQ Q Q
Sbjct: 1087 HQHQHQHQHQHQHQHQHQHQHQHQQHQQ 1114
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQ 424
HQHQHQ Q +H+HQHQHQ Q
Sbjct: 1077 HQHQHQHQHQHQHQHQHQHQ 1096
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQ 424
HQHQHQ Q +H+HQHQHQ Q
Sbjct: 1085 HQHQHQHQHQHQHQHQHQHQ 1104
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/21 (71%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -2
Query: 483 HHQHQHQ-QPEHEHQHQHQQQ 424
H QHQHQ Q +H+HQHQHQ Q
Sbjct: 1072 HQQHQHQHQHQHQHQHQHQHQ 1092
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/21 (71%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -2
Query: 483 HHQHQHQQPEHEH-QHQHQQQ 424
H QHQHQQ +H+H QHQHQ Q
Sbjct: 1060 HQQHQHQQHQHQHQQHQHQHQ 1080
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQ 424
HQHQHQ Q +H+HQHQHQ Q
Sbjct: 1081 HQHQHQHQHQHQHQHQHQHQ 1100
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQ 424
HQHQHQ Q +H+HQHQHQ Q
Sbjct: 1083 HQHQHQHQHQHQHQHQHQHQ 1102
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQ 424
HQHQHQ Q +H+HQHQHQ Q
Sbjct: 1079 HQHQHQHQHQHQHQHQHQHQ 1098
Score = 37.7 bits (86), Expect = 0.068
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQQ 424
HQHQHQ Q +H+HQHQHQ Q
Sbjct: 1075 HQHQHQHQHQHQHQHQHQHQ 1094
Score = 37.4 bits (85), Expect = 0.089
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQHQQQ 424
HQHQ Q +H+HQHQHQ Q
Sbjct: 1070 HQHQQHQHQHQHQHQHQHQ 1088
Score = 34.7 bits (78), Expect = 0.57
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQHQQQ 424
HQHQHQ +H+ QHQQQ
Sbjct: 1103 HQHQHQHQQHQQHQQHQQQ 1121
Score = 34.3 bits (77), Expect = 0.75
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTPRNDDSQ 400
HHQ+ HQQ + QHQH QQ Q
Sbjct: 971 HHQNNHQQHQQHQQHQHHQQQQLQQQQQ 998
Score = 33.5 bits (75), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (57%), Gaps = 4/31 (12%)
Frame = -2
Query: 480 HQHQHQQ----PEHEHQHQHQQQTPRNDDSQ 400
HQHQHQQ +H+ QH HQQ + +Q
Sbjct: 1105 HQHQHQQHQQHQQHQQQHHHQQNQHHHQQNQ 1135
Score = 33.1 bits (74), Expect = 1.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 477 QHQHQQPEHEHQHQHQQQTPRNDDSQ 400
QHQHQQ QHQHQQ ++ Q
Sbjct: 1051 QHQHQQQHQHQQHQHQQHQHQHQQHQ 1076
Score = 33.1 bits (74), Expect = 1.7
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQH----QHQQQTPRNDDSQ 400
HQHQHQ Q +H+HQH QHQQ ++ Q
Sbjct: 1095 HQHQHQHQHQHQHQHQQHQQHQQHQQQHHHQQ 1126
Score = 33.1 bits (74), Expect = 1.7
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 480 HQHQHQQPEHEHQ-HQHQQQ 424
HQ QHQ +H+HQ HQHQ Q
Sbjct: 1054 HQQQHQHQQHQHQQHQHQHQ 1073
Score = 32.3 bits (72), Expect = 2.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 477 QHQHQQPEHEHQHQHQQQ 424
QHQ QQ + + QHQHQQQ
Sbjct: 1040 QHQQQQQQQQQQHQHQQQ 1057
Score = 32.0 bits (71), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTPRNDDSQ 400
HH HQ QQ + + Q Q QQQ + Q
Sbjct: 1011 HHHHQQQQQQQQQQQQQQQQQQQQQQQQ 1038
Score = 32.0 bits (71), Expect = 3.7
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 480 HQHQHQQPE-HEHQHQHQQQTPRNDDSQ 400
HQHQ QQ + H+ HQHQQQ + Q
Sbjct: 937 HQHQQQQQQPHQQPHQHQQQQHQQPHQQ 964
Score = 31.6 bits (70), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 477 QHQHQQPEHEHQHQHQQQTPRNDDSQ 400
Q Q QQ +H+HQ QHQ Q ++ Q
Sbjct: 1044 QQQQQQQQHQHQQQHQHQQHQHQQHQ 1069
Score = 31.6 bits (70), Expect = 4.9
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQHQQQTPRNDDSQ 400
HQ Q QQ + +HQHQ Q Q ++ Q
Sbjct: 1041 HQQQQQQQQQQHQHQQQHQHQQHQHQQ 1067
Score = 31.6 bits (70), Expect = 4.9
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQ 427
HHQ QH Q H+ QHQQ
Sbjct: 966 HHQQQHHQNNHQQHQQHQQ 984
Score = 31.2 bits (69), Expect = 6.4
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 477 QHQHQQPEHEH-QHQHQQQT 421
QH HQQ +H H Q+QHQQ T
Sbjct: 1121 QHHHQQNQHHHQQNQHQQNT 1140
Score = 30.8 bits (68), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQHQQQTPRNDDSQ 400
HQHQ QQ + HQ H QQ ++ Q
Sbjct: 951 HQHQQQQHQQPHQQPHHQQQHHQNNHQ 977
Score = 30.8 bits (68), Expect = 8.3
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTPRNDDSQ 400
HHQ Q QQ + + Q Q QQQ + Q
Sbjct: 1013 HHQQQQQQQQQQQQQQQQQQQQQQQQQQ 1040
>gb|AAD23383.1|AF108140_1 gamete-specific homeodomain protein GSP1 [Chlamydomonas
reinhardtii] gi|16209575|gb|AAL14119.1| gamete-specific
homeodomain protein [Chlamydomonas reinhardtii]
Length = 1033
Score = 41.6 bits (96), Expect = 0.005
Identities = 14/22 (63%), Positives = 15/22 (67%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTP 418
HHQH HQ +H HQH HQQ P
Sbjct: 295 HHQHHHQHHQHHHQHHHQQHVP 316
Score = 33.1 bits (74), Expect = 1.7
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQH 433
HQHQHQ +H QHQH
Sbjct: 140 HQHQHQHQQHHQQHQH 155
Score = 32.0 bits (71), Expect = 3.7
Identities = 11/21 (52%), Positives = 12/21 (56%)
Frame = -2
Query: 480 HQHQHQQPEHEHQHQHQQQTP 418
HQHQHQ +H QHQ P
Sbjct: 138 HQHQHQHQHQQHHQQHQHVVP 158
Score = 32.0 bits (71), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTP 418
HHQ QH QP+H+ Q+ Q P
Sbjct: 248 HHQQQHLQPQHQQYQQYPPQLP 269
>gb|AAO00994.1| CG32170-PA [Drosophila erecta]
Length = 550
Score = 39.3 bits (90), Expect = 0.023
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -2
Query: 483 HHQHQHQQPEHEH---QHQHQQQTPRNDDSQ 400
HHQ QHQQ +H+H QHQHQQ N SQ
Sbjct: 406 HHQQQHQQHQHQHQHQQHQHQQHQQPNHLSQ 436
Score = 35.0 bits (79), Expect = 0.44
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTPRNDDSQGSG 391
H QHQHQ +HQHQ QQ Q G
Sbjct: 411 HQQHQHQHQHQQHQHQQHQQPNHLSQQQKGG 441
>sp|P33293|BAF1_KLUMA TRANSCRIPTION FACTOR BAF1 (ARS BINDING FACTOR 1) (PROTEIN ABF1)
(BIDIRECTIONALLY ACTING FACTOR) gi|422085|pir||S33791
ARS-binding protein - yeast (Kluyveromyces marxianus)
gi|312694|emb|CAA79673.1| ARS-binding factor 1
[Kluyveromyces marxianus]
Length = 496
Score = 39.3 bits (90), Expect = 0.023
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 486 VHHQHQHQ-QPEHEHQHQHQQQTPRNDDSQ 400
+ HQHQHQ Q +H+HQHQHQ Q + Q
Sbjct: 295 LQHQHQHQHQHQHQHQHQHQSQDQHQNQHQ 324
Score = 34.7 bits (78), Expect = 0.57
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 3/29 (10%)
Frame = -2
Query: 477 QHQHQ---QPEHEHQHQHQQQTPRNDDSQ 400
QHQHQ Q +H+HQHQHQ Q Q
Sbjct: 290 QHQHQLQHQHQHQHQHQHQHQHQHQSQDQ 318
Score = 32.0 bits (71), Expect = 3.7
Identities = 13/19 (68%), Positives = 16/19 (83%), Gaps = 1/19 (5%)
Frame = -2
Query: 480 HQHQHQ-QPEHEHQHQHQQ 427
HQHQHQ Q + +HQ+QHQQ
Sbjct: 307 HQHQHQHQSQDQHQNQHQQ 325
>gb|AAD39751.1|AF128626_1 RNA binding protein PufA [Dictyostelium discoideum]
Length = 795
Score = 38.9 bits (89), Expect = 0.030
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQ 424
HH HQ QQ H HQH HQQQ
Sbjct: 220 HHHHQQQQHHHHHQHHHQQQ 239
Score = 32.3 bits (72), Expect = 2.9
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -2
Query: 486 VHHQHQHQQPEHEHQHQHQQQ 424
+ H HQQ +H H HQH Q
Sbjct: 217 IQQHHHHQQQQHHHHHQHHHQ 237
Score = 31.2 bits (69), Expect = 6.4
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = -2
Query: 483 HHQHQHQQPEHEHQHQHQQQTPRN 412
HH H HQQ + + Q Q QQ R+
Sbjct: 17 HHHHHHQQSQQQQQQQQSQQQQRS 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,388,890
Number of Sequences: 1393205
Number of extensions: 9232659
Number of successful extensions: 54888
Number of sequences better than 10.0: 597
Number of HSP's better than 10.0 without gapping: 29494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45907
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
